GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003489-TA|BGIBMGA003489-PA|IPR001478|PDZ/DHR/GLGF
         (167 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    23   1.2  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    23   1.2  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    22   2.7  
EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor 1-a...    22   2.7  
AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...    21   8.4  

>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 2/40 (5%)

Query: 85  PAHTLVVIRSLVPGGVAQQDGRLIPGDRLLFNLENASLEQ 124
           PA     ++S+     A Q+   +PGD + FN++N S+++
Sbjct: 225 PAGLTTEVKSVEMHHEALQEA--VPGDNVGFNVKNVSVKE 262


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 2/40 (5%)

Query: 85  PAHTLVVIRSLVPGGVAQQDGRLIPGDRLLFNLENASLEQ 124
           PA     ++S+     A Q+   +PGD + FN++N S+++
Sbjct: 282 PAGLTTEVKSVEMHHEALQEA--VPGDNVGFNVKNVSVKE 319


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 7/17 (41%), Positives = 14/17 (82%)

Query: 108 IPGDRLLFNLENASLEQ 124
           +PGD + FN++N S+++
Sbjct: 303 LPGDNVGFNVKNISVKE 319


>EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor
           1-alpha protein.
          Length = 119

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 7/17 (41%), Positives = 14/17 (82%)

Query: 108 IPGDRLLFNLENASLEQ 124
           +PGD + FN++N S+++
Sbjct: 14  LPGDNVGFNVKNISVKE 30


>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score = 20.6 bits (41), Expect = 8.4
 Identities = 8/29 (27%), Positives = 15/29 (51%)

Query: 97  PGGVAQQDGRLIPGDRLLFNLENASLEQA 125
           PG   ++DG ++ G  L F +     ++A
Sbjct: 179 PGQCGREDGYILEGKELEFYMRRIKSKKA 207


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.136    0.386 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,587
Number of Sequences: 429
Number of extensions: 874
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 167
length of database: 140,377
effective HSP length: 53
effective length of query: 114
effective length of database: 117,640
effective search space: 13410960
effective search space used: 13410960
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 41 (20.6 bits)