GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003484-TA|BGIBMGA003484-PA|IPR000684|Eukaryotic RNA
polymerase II heptapeptide repeat, IPR007080|RNA polymerase Rpb1,
domain 1, IPR000722|RNA polymerase, alpha subunit, IPR007066|RNA
polymerase Rpb1, domain 3, IPR007083|RNA polymerase Rpb1, domain 4,
IPR007081|RNA polymerase Rpb1, domain 5, IPR007075|RNA polymerase
Rpb1, domain 6, IPR007073|RNA polymerase Rpb1, domain 7, IPR006592|RNA
polymerase I subunit A, N-terminal
         (1827 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...   582   e-168
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    27   1.1  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            27   1.4  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              25   5.7  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                25   5.7  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    24   9.9  

>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score =  582 bits (1438), Expect = e-168
 Identities = 270/296 (91%), Positives = 283/296 (95%)

Query: 530 DTLTAVRKMTKRDVFLTKEQVMNLLMFLPTWDGKIPQPCILKPQPLWTGKQIFTLIIPGP 589
           DTLTAVRKMTKRDVF+ KEQ+MN+LMFLP+WDGK+PQPCILKP+PLWTGKQI +LIIPG 
Sbjct: 1   DTLTAVRKMTKRDVFIEKEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQISSLIIPGN 60

Query: 590 VNMIRTHSTHPDEEDDGPYKWISPGDTKVVVEHGELLMGILCKKSLGASAGSLLHICMLE 649
           VNMIRTHST P EEDDGPYKWISPGDTKV+VEHGEL+MGILCKK+LG SAGSLLHICMLE
Sbjct: 61  VNMIRTHSTXPXEEDDGPYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLE 120

Query: 650 LGHETAGRFYGNIQTVINNWLLLEGHSIAIGDTIADPQTYQEIQRAIVKAKDDVIEVIQK 709
           LGHE  GRFYGNIQTV NNWLLLEGHSI IGDTIADPQTY EIQ+ I KAK+DVIEVIQK
Sbjct: 121 LGHEVCGRFYGNIQTVXNNWLLLEGHSIGIGDTIADPQTYLEIQKXIKKAKEDVIEVIQK 180

Query: 710 AHNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNI 769
           AHNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV+GSKGSNI
Sbjct: 181 AHNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNI 240

Query: 770 NISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSE 825
           NISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSE
Sbjct: 241 NISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSE 296


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 2/53 (3%)

Query: 723 LRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVI 775
           +RQ+ E  V+ ++N +++ T     K + + NN K  +   S  SN+ ++Q +
Sbjct: 495 VRQSEEEAVSLLINFSKNNTIVDISKLVNKRNNAK--IYTSSVNSNLTVNQTV 545


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 27.1 bits (57), Expect = 1.4
 Identities = 17/51 (33%), Positives = 23/51 (45%)

Query: 382 ELVTPFNLDRMQELVRRGNAQYPGAKYIVRENGERIDLRFHPKSSDLHLLY 432
           ELV   +LD+ QE VR     +      +   G R+D   H   SDL  +Y
Sbjct: 171 ELVGLHDLDQSQEYVRSKLVDFLNDLVAIGVAGFRVDAAKHMWPSDLRTIY 221


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 25.0 bits (52), Expect = 5.7
 Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 1/45 (2%)

Query: 1445 LGGAEVGMYFGVGTPSMSPLMTPWSTQNTPGYGSSVWSPCQVGSS 1489
            L   +V M  GVG  + SP +T W   N P   S ++    V  S
Sbjct: 820  LSTGKVEMITGVGKAT-SPNLTKWGNPNRPIVQSGIFGKYMVSPS 863


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 25.0 bits (52), Expect = 5.7
 Identities = 9/35 (25%), Positives = 17/35 (48%)

Query: 100 IKILRCVCFYCSKLLVSPTNPKIKEVIMKSKGQPR 134
           +K + C   +C    +   + K K ++M   GQP+
Sbjct: 161 LKSITCALQFCHNAGIVHADVKPKNILMSKNGQPK 195


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 1/46 (2%)

Query: 236 DWMIVTVLPVPPLCV-RPAVVMFGSAKNQDDLTHKLADIIKANNDL 280
           D+  + VL +PP  V +P +V+F +A    ++ +K   +I  N D+
Sbjct: 94  DYGGIGVLRLPPDKVWKPDIVLFNNADGNYEVRYKSNVLIYPNGDV 139


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.136    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 437,523
Number of Sequences: 429
Number of extensions: 18674
Number of successful extensions: 40
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 37
Number of HSP's gapped (non-prelim): 7
length of query: 1827
length of database: 140,377
effective HSP length: 68
effective length of query: 1759
effective length of database: 111,205
effective search space: 195609595
effective search space used: 195609595
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 50 (24.2 bits)