GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003483-TA|BGIBMGA003483-PA|IPR001841|Zinc finger,
RING-type, IPR002867|Zinc finger, C6HC-type
         (484 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    25   1.9  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   4.3  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   5.7  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   7.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   7.5  
AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.            22   9.9  

>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 24.6 bits (51), Expect = 1.9
 Identities = 10/38 (26%), Positives = 15/38 (39%)

Query: 267 TANYISAHTKDCPKCQICIEKNGGCNHMQCGSCRHDFC 304
           T +Y       C KC+  I  +  C  +QC     + C
Sbjct: 32  TTSYCLGCGDSCHKCKYGIAMSSACGIVQCAKGPDELC 69


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.4 bits (48), Expect = 4.3
 Identities = 11/34 (32%), Positives = 19/34 (55%)

Query: 360 LKLEEQTLESLKSRINEKVMAGEGTWIDWQYLWD 393
           LKL +    +LK++I    +  E +W D++  WD
Sbjct: 56  LKLSQLIDVNLKNQIMTTNLWVEQSWYDYKLKWD 89


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 23.0 bits (47), Expect = 5.7
 Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 2/52 (3%)

Query: 249 TDCATIRQWLTKCADDSETANYISAHTKDCPKCQICIEKNGGCNHMQCGSCR 300
           T C T+ +  +KC+  S   +    H++ CP  +    K  G N +  GS R
Sbjct: 353 TKCNTLERTPSKCSQTSVHYSNGQTHSQLCPTPRSTHLKVSGINRV--GSTR 402


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.6 bits (46), Expect = 7.5
 Identities = 9/35 (25%), Positives = 18/35 (51%)

Query: 447  TTHRGDLENQMDIAEKRRTTLLKDFLEFSSKSNNS 481
            T+ R +  NQ+D  + +    + DF+   + S +S
Sbjct: 1793 TSSRTESSNQLDAGKLKHIRAVSDFIYHGTSSTSS 1827


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.6 bits (46), Expect = 7.5
 Identities = 9/35 (25%), Positives = 18/35 (51%)

Query: 447  TTHRGDLENQMDIAEKRRTTLLKDFLEFSSKSNNS 481
            T+ R +  NQ+D  + +    + DF+   + S +S
Sbjct: 1789 TSSRTESSNQLDAGKLKHIRAVSDFIYHGTSSTSS 1823


>AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.
          Length = 122

 Score = 22.2 bits (45), Expect = 9.9
 Identities = 10/20 (50%), Positives = 11/20 (55%)

Query: 146 AMHFEVQIMQGVSNTIRCMA 165
           A HFE+  M G   T  CMA
Sbjct: 27  ASHFELDYMLGRKITFFCMA 46


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.132    0.430 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,694
Number of Sequences: 429
Number of extensions: 4880
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 6
length of query: 484
length of database: 140,377
effective HSP length: 60
effective length of query: 424
effective length of database: 114,637
effective search space: 48606088
effective search space used: 48606088
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 45 (22.2 bits)