GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003479-TA|BGIBMGA003479-PA|IPR007604|CP2 transcription
factor
         (363 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        23   5.4  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        23   5.4  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        23   5.4  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    23   5.4  
AF393493-1|AAL60418.1|  142|Apis mellifera odorant binding prote...    22   7.2  
AF166497-1|AAD51945.1|  142|Apis mellifera putative odorant-bind...    22   7.2  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    22   7.2  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   9.5  

>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 5.4
 Identities = 11/35 (31%), Positives = 18/35 (51%)

Query: 75  STDFSSQKGVKGLPLHIQIDTFEDPRDTQVYHRGY 109
           ST+F+ +  V  +     I+  ED R+ +  H GY
Sbjct: 466 STNFNERPAVAVVSKSSSINKLEDLRNKKSCHSGY 500


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 5.4
 Identities = 11/35 (31%), Positives = 18/35 (51%)

Query: 75  STDFSSQKGVKGLPLHIQIDTFEDPRDTQVYHRGY 109
           ST+F+ +  V  +     I+  ED R+ +  H GY
Sbjct: 466 STNFNERPAVAVVSKSSSINKLEDLRNKKSCHSGY 500


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 5.4
 Identities = 11/35 (31%), Positives = 18/35 (51%)

Query: 75  STDFSSQKGVKGLPLHIQIDTFEDPRDTQVYHRGY 109
           ST+F+ +  V  +     I+  ED R+ +  H GY
Sbjct: 466 STNFNERPAVAVVSKSSSINKLEDLRNKKSCHSGY 500


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 22.6 bits (46), Expect = 5.4
 Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 1/63 (1%)

Query: 225 PPDAPGYREVGALSPYDRKDSLELEGVLGKRARTSTPTLSERVMLYVRQDAEDVYTPLHV 284
           P +  GY++ G +S   +    +     G RART  P +  RV         D Y P   
Sbjct: 606 PAERLGYQK-GGISEIQKHKWFDGFNWEGLRARTLEPPIMPRVQNATDTTNFDEYPPDSD 664

Query: 285 VPP 287
            PP
Sbjct: 665 PPP 667


>AF393493-1|AAL60418.1|  142|Apis mellifera odorant binding protein
           ASP2 protein.
          Length = 142

 Score = 22.2 bits (45), Expect = 7.2
 Identities = 9/15 (60%), Positives = 12/15 (80%)

Query: 337 LLEVVPAGNTDDERL 351
           ++EVV AGN DD +L
Sbjct: 93  MIEVVHAGNADDIQL 107


>AF166497-1|AAD51945.1|  142|Apis mellifera putative odorant-binding
           protein ASP2 protein.
          Length = 142

 Score = 22.2 bits (45), Expect = 7.2
 Identities = 9/15 (60%), Positives = 12/15 (80%)

Query: 337 LLEVVPAGNTDDERL 351
           ++EVV AGN DD +L
Sbjct: 93  MIEVVHAGNADDIQL 107


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 22.2 bits (45), Expect = 7.2
 Identities = 17/56 (30%), Positives = 22/56 (39%)

Query: 115 FCDKGAERKTRDEERRAAKRKMSATNRKKLDEIYHPVTERSEFYSMADLSKPPVLF 170
           F D  AE   RDE     +   S  N  K  E+   V    +F + A+ S  P  F
Sbjct: 281 FVDNYAEENKRDEIVLLTEAYSSLENTLKYYEVGSNVPFNFKFITDANSSSTPEQF 336


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.8 bits (44), Expect = 9.5
 Identities = 9/36 (25%), Positives = 18/36 (50%)

Query: 123 KTRDEERRAAKRKMSATNRKKLDEIYHPVTERSEFY 158
           K  +EE++  K+ +S +  +   EI    T+R   +
Sbjct: 535 KETEEEKKKTKQSLSPSENQSKMEILPKTTQRQHHH 570


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.134    0.399 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,112
Number of Sequences: 429
Number of extensions: 4930
Number of successful extensions: 14
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 8
length of query: 363
length of database: 140,377
effective HSP length: 59
effective length of query: 304
effective length of database: 115,066
effective search space: 34980064
effective search space used: 34980064
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 44 (21.8 bits)