GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003477-TA|BGIBMGA003477-PA|undefined
         (166 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   6.3  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   8.3  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    21   8.3  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 9/20 (45%), Positives = 11/20 (55%)

Query: 71   PAPPGPRLFGLPTNSSNDSR 90
            P PP PR      +S NDS+
Sbjct: 1859 PPPPPPRNHDQNNSSFNDSK 1878


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 20.6 bits (41), Expect = 8.3
 Identities = 7/18 (38%), Positives = 12/18 (66%)

Query: 92  GWRRKEVMEVGGETWRAY 109
           GW+ +++ E+  E  RAY
Sbjct: 494 GWKVEKIQEIYLEALRAY 511


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 20.6 bits (41), Expect = 8.3
 Identities = 7/12 (58%), Positives = 10/12 (83%)

Query: 145 PPLGQDTHLHLH 156
           PPLG++ +L LH
Sbjct: 246 PPLGKNLNLSLH 257


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.134    0.425 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 53,207
Number of Sequences: 429
Number of extensions: 2666
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 166
length of database: 140,377
effective HSP length: 53
effective length of query: 113
effective length of database: 117,640
effective search space: 13293320
effective search space used: 13293320
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 41 (20.6 bits)