GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003475-TA|BGIBMGA003475-PA|IPR001326|Translation
elongation factor EF1B, beta and delta chains, C-terminal
         (262 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    28   0.098
AY352277-2|AAQ67419.1|   88|Apis mellifera EX4.8-5.8 protein.          21   8.5  

>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 27.9 bits (59), Expect = 0.098
 Identities = 13/37 (35%), Positives = 20/37 (54%)

Query: 198 AVRSISTDGLLWGAAKLVPLAYGIHKLQISCVVEDDK 234
           AV  I+   LL G    VP++ G+H+     V++D K
Sbjct: 142 AVAGIAVVWLLAGLISFVPISLGLHRANEPVVLDDSK 178


>AY352277-2|AAQ67419.1|   88|Apis mellifera EX4.8-5.8 protein.
          Length = 88

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 10/41 (24%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 204 TDGLLWGAAKLVPLAYGIHKLQISCVVEDDKVSIDWLTEEI 244
           T  +L G  +   + +G++K    C+V   K+  +W+  +I
Sbjct: 34  THNILRGM-QFTDITFGVNKWSKVCIVVRRKLEENWIHVDI 73


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.312    0.128    0.352 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 51,590
Number of Sequences: 429
Number of extensions: 1652
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 2
length of query: 262
length of database: 140,377
effective HSP length: 57
effective length of query: 205
effective length of database: 115,924
effective search space: 23764420
effective search space used: 23764420
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 43 (21.4 bits)