GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003473-TA|BGIBMGA003473-PA|IPR001091|Site-specific
DNA-methyltransferase (cytosine-N4-specific)
         (1210 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    26   1.8  
EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    24   5.5  
AM292339-1|CAL23151.2|  387|Tribolium castaneum gustatory recept...    24   5.5  
AM292338-1|CAL23150.2|  372|Tribolium castaneum gustatory recept...    24   5.5  
AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory recept...    24   7.2  

>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 25.8 bits (54), Expect = 1.8
 Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 1/42 (2%)

Query: 675 VACAGPAPLSSPRRCGATSLSVQAPRRDPHEERVW-RTLEEM 715
           +AC GP P   P     +      P  D H+E+    TLEE+
Sbjct: 171 IACMGPPPQPEPPVTFNSLNGAHTPLTDDHDEKYGVPTLEEL 212


>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 24.2 bits (50), Expect = 5.5
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 4/47 (8%)

Query: 660 LEKLPLPVAEVSMTRVACAGPAPLSSPRRCGATSLSVQAPR-RDPHE 705
           +E +P PV EV+    +   PAP   P R   T+L  +A   RDP +
Sbjct: 390 VEPVPQPVEEVTQKPSSTKAPAP---PSRDLTTTLCTKAGYVRDPDD 433


>AM292339-1|CAL23151.2|  387|Tribolium castaneum gustatory receptor
           candidate 18 protein.
          Length = 387

 Score = 24.2 bits (50), Expect = 5.5
 Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 1/51 (1%)

Query: 158 DTFNGLNQQYAQLQNVMPPKLPKWFNNCILKTYLLLHD-VSVVSKERADAV 207
           DT  GL   +++    +   L  W+   ++ T LL H  +  V K R +A+
Sbjct: 144 DTLGGLYSTWSKKSKQVEYFLIHWYPRMLISTKLLAHFLILTVLKARFEAI 194


>AM292338-1|CAL23150.2|  372|Tribolium castaneum gustatory receptor
           candidate 17 protein.
          Length = 372

 Score = 24.2 bits (50), Expect = 5.5
 Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 1/51 (1%)

Query: 158 DTFNGLNQQYAQLQNVMPPKLPKWFNNCILKTYLLLHD-VSVVSKERADAV 207
           DT  GL   +++    +   L  W+   ++ T LL H  +  V K R +A+
Sbjct: 144 DTLGGLYSTWSKKSKQVEYFLIHWYPRMLISTKLLAHFLILTVLKARFEAI 194


>AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory receptor
           candidate 2 protein.
          Length = 587

 Score = 23.8 bits (49), Expect = 7.2
 Identities = 9/36 (25%), Positives = 21/36 (58%)

Query: 495 YAVRATLLSVICLTSSGLHGEAAKQLIRMTSEDSDL 530
           +A+  T +  +CL  + +H E+ K L+ + S  +++
Sbjct: 324 FALLITRIVCLCLFGAKVHDESIKPLLTLNSVPTEI 359


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.317    0.132    0.395 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 273,255
Number of Sequences: 317
Number of extensions: 11868
Number of successful extensions: 33
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 30
Number of HSP's gapped (non-prelim): 7
length of query: 1210
length of database: 114,650
effective HSP length: 65
effective length of query: 1145
effective length of database: 94,045
effective search space: 107681525
effective search space used: 107681525
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 48 (23.4 bits)