Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA003473-TA|BGIBMGA003473-PA|IPR001091|Site-specific
DNA-methyltransferase (cytosine-N4-specific)
(1210 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0222 + 32466379-32466741,32466849-32466948,32467443-324675... 155 2e-37
02_05_0916 - 32706039-32706332,32707483-32708103,32708450-327090... 36 0.26
11_01_0524 - 4115125-4115491,4116096-4116180,4116796-4116938,411... 34 0.61
03_01_0093 - 745434-746057,746492-747112,747222-747791,747870-74... 34 0.61
09_04_0185 - 15396119-15396317,15396781-15396821,15396932-153970... 33 1.8
08_02_0052 + 11699468-11699700,11699799-11699916,11699991-117006... 32 2.4
07_03_0272 - 16143201-16144937,16145346-16145351,16145406-161455... 32 3.2
09_04_0187 - 15403048-15403237,15403808-15403959,15404052-154042... 31 4.3
04_04_1242 - 32016553-32016857,32017628-32017784,32017871-320180... 31 5.6
04_04_1035 + 30283456-30283536,30284823-30285359,30285508-302865... 31 5.6
04_04_0416 + 25042937-25043350,25044038-25044238,25044343-250445... 31 5.6
07_03_1339 + 25879246-25881154,25881502-25881696,25881777-258819... 30 9.9
06_03_0022 - 15536811-15536899,15537485-15537664,15537706-155379... 30 9.9
06_02_0177 + 12644270-12644581,12645717-12646054,12646291-12646489 30 9.9
04_04_0559 - 26234106-26235169,26235437-26235452 30 9.9
01_05_0341 + 21146571-21146960 30 9.9
>03_06_0222 +
32466379-32466741,32466849-32466948,32467443-32467547,
32467627-32467789,32467995-32468115,32468625-32468705,
32468813-32468911,32468955-32468986,32468987-32469137,
32469477-32469563,32470290-32470409,32470514-32470645,
32470743-32470840,32470919-32471042,32471126-32471233,
32471822-32471957,32472751-32472861,32472963-32473026,
32473133-32473205,32473762-32473938,32474012-32474122,
32474189-32474449,32474811-32474981,32475073-32475228,
32475590-32475823,32475936-32476103,32476316-32476425,
32476513-32477041
Length = 1394
Score = 155 bits (377), Expect = 2e-37
Identities = 146/538 (27%), Positives = 226/538 (42%), Gaps = 44/538 (8%)
Query: 329 IDLSTEVHGAALNNNDIEAIKKFLQEYASKALLPYIEKQISQLSESVAN-RKGVSRSLLS 387
I+ STE GA N+ + IK F+Q+ AS ++PY+E++I L++ VA RKG + +
Sbjct: 266 INSSTEADGADAENSWLPYIKDFMQDLASNHIIPYMEQKIRVLNQQVATTRKGFRNQIKN 325
Query: 388 AT-KRWFGTGKGGNATGNSAVV--------YTNDCPELQLRRLGDLWFLCGQWQRAFDTY 438
++ + N V YT E Q+R LGD F+ ++ A Y
Sbjct: 326 LWWRKRDDVPEAANGPMQVFAVTLFFFFNRYTFTSIESQIRVLGDYAFMLRDYELALSNY 385
Query: 439 HTAKREFYADSAWLCYAGALEMAAISAFMAGDSNRKTHGYLEESIVTYLNTCRM-VQYAV 497
++ D AW +AG EM+ + FM S + L+ + TYL + A
Sbjct: 386 RLLSTDYKLDKAWKRFAGVQEMSGLCYFMLDQSRKDAEYCLDSAFSTYLRIGSSGKRNAT 445
Query: 498 RATLLSVICLTSSGLHGEAAKQLIRMTSEDSDLRSAMLLEQAALCF-LSGPGTKAMCRKY 556
R + L + G + EA+ R+++E+ L SA+LLEQAA C+ LS P M RKY
Sbjct: 446 RCGIWWAEMLKTRGQYREASSVYYRVSNEEPSLHSAVLLEQAACCYVLSKP---PMLRKY 502
Query: 557 AFHMVLAGHRFSKAGQKKHAYRCYKQAHQVYSGSGWRLATDHVQFXXXXXXXXXXXXHDA 616
FH+VLAG+ + + QK+HA R Y+ A VY W DHV F D
Sbjct: 503 GFHLVLAGNSYYISDQKQHAVRAYRNALFVYKQHPWSYINDHVHF-NVGRWYGVLGIFDV 561
Query: 617 VXXXXXXXXXXXXXXXXXXEAFLREYMHAHQQWQXXXXXXXXXLEKLPLPVAEVSMTRVA 676
FL ++ H Q + KL LPV + RV
Sbjct: 562 AIKHLLEVIACSHQSLTTQSMFLNDFFHFVQ-----SMGKKFDVYKLQLPVINMPSLRV- 615
Query: 677 CAGPAPLSSPRRCGATSLSVQAPRRDPHEERVWRTLEEMLVQVARGAVPMIFKPTLDLYD 736
+ R A+ V E +W+ LEE ++ + + + DL
Sbjct: 616 ------IYEDHRTYASDADVNV------SESIWQELEEEMIPSSSIVRTNWLEKSPDLRK 663
Query: 737 DTTDCHPLVPQGEPIQISVTLWNPLKISLILKDVELLWRF-TPLNESG------DSDDNN 789
C +V GE +++ + L NPL+I +++ + L+ + T L+ S +
Sbjct: 664 YKDSCVCVV--GEAVKVRIELRNPLQIPVVVSCISLICQLSTSLDASSAVNSVLTTGAGE 721
Query: 790 SIYNEIALAQGVEVASNVIVGQKLPSVVLEGDSKKSLIFSLTPMKVGQVYIQGLAYKL 847
I N E N KL +VL G KS+ +TP G + + G+ + L
Sbjct: 722 DIANTKPAISTFEDDGNNFTVSKL-DIVLGGSETKSVQLEVTPKVEGILKLHGIRWTL 778
Score = 54.0 bits (124), Expect = 7e-07
Identities = 45/143 (31%), Positives = 68/143 (47%), Gaps = 17/143 (11%)
Query: 119 WFDAWRETYLDVQFPSDHEFTKHFLSCI-IVGTTDDENV---VDTFNGLNQQYAQL-QNV 173
W + + S+HE H ++C+ +V + D+E + VD FN NQ + L + +
Sbjct: 164 WIKKFNRALMRTLSFSEHETFDHPVACLLVVSSKDNEPISKFVDLFN-TNQLPSLLNEGI 222
Query: 174 MPPKLPKWFNNCILKTYLLLHDVSVVSKERADAVFDTLKHAFGPNSCFMLPINSKSTSDA 233
M P+ ILK YL+LHD +E A + +K G N C +L INS + +D
Sbjct: 223 MDPQ--------ILKHYLILHDQQDGPQEIAMNILAEMKSTLGLNDCKLLCINSSTEADG 274
Query: 234 NVPADLWSQYIKRSPDSTSDVAS 256
+ W YIK D D+AS
Sbjct: 275 ADAENSWLPYIK---DFMQDLAS 294
>02_05_0916 -
32706039-32706332,32707483-32708103,32708450-32709070,
32709183-32709752,32709840-32709918,32710002-32710075,
32711336-32711398
Length = 773
Score = 35.5 bits (78), Expect = 0.26
Identities = 36/135 (26%), Positives = 62/135 (45%), Gaps = 16/135 (11%)
Query: 798 AQGVEVASNVIVGQKLPSVVLEGDSKKSLIFSLTPMKVGQVYIQGLAYKLINAG------ 851
++GV V +G + +L GD K+ L+ +TP+ +G + G+ +LIN
Sbjct: 407 SKGVNPDEAVAMGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTIPTK 466
Query: 852 -----EGASENSTGVSI---QGKVDLMSGVKSMDKRLEITVIPEAPCLQMTFSETNPDII 903
A++N T V I QG+ ++ + K + + ++ IP AP M E DI
Sbjct: 467 KSQVFSTAADNQTQVGIRVLQGEREMATDNKLLGE-FDLVGIPPAP-RGMPQIEVTFDID 524
Query: 904 SGEIRTVDVELTNVG 918
+ I TV + + G
Sbjct: 525 ANGIVTVSAKDKSTG 539
>11_01_0524 -
4115125-4115491,4116096-4116180,4116796-4116938,
4117449-4117654,4118650-4118748,4118958-4118993,
4119222-4119276,4119505-4119690,4120572-4120759
Length = 454
Score = 34.3 bits (75), Expect = 0.61
Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 6/70 (8%)
Query: 383 RSLLSATKRWFGTGKGGNATGNSAVVYTNDCPELQLRRLGDLWFL------CGQWQRAFD 436
RS + KR G G GG +G++A +D RL D + L C W R D
Sbjct: 9 RSGSAGLKRRRGPGGGGGGSGSTAQALNDDTLRSVFSRLDDHFDLARCSTVCNSWNRVID 68
Query: 437 TYHTAKREFY 446
T H + +Y
Sbjct: 69 TAHLMRDLYY 78
>03_01_0093 -
745434-746057,746492-747112,747222-747791,747870-747948,
748258-748331,748385-748387
Length = 656
Score = 34.3 bits (75), Expect = 0.61
Identities = 36/132 (27%), Positives = 60/132 (45%), Gaps = 16/132 (12%)
Query: 796 ALAQGVEVASNVIVGQKLPSVVLEGDSKKSLIFSLTPMKVGQVYIQGLAYKLINAG---- 851
A ++GV V +G + +L GD K L+ +TP+ +G + G+ +LIN
Sbjct: 385 APSKGVNPDEAVAMGAAIQGGILRGDVKDLLLLDVTPLSLGIETLGGIFTRLINRNTTVP 444
Query: 852 -------EGASENSTGVSI---QGKVDLMSGVKSMDKRLEITVIPEAPCLQMTFSETNPD 901
A++N T V I QG+ ++ + K + + ++ IP AP M E D
Sbjct: 445 TKKSQVFSTAADNQTQVGIKVLQGEREMAADNKLLGE-FDLVGIPPAP-RGMPQIEVTFD 502
Query: 902 IISGEIRTVDVE 913
I + I TV +
Sbjct: 503 IDANGIVTVSAK 514
>09_04_0185 -
15396119-15396317,15396781-15396821,15396932-15397090,
15397320-15397517
Length = 198
Score = 32.7 bits (71), Expect = 1.8
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
Query: 444 EFYAD----SAWLCYAGALEMAAISAFMAGDSNR-KTHGYLEES 482
+FY D SAW C+ L+ AA++ F+ D+N K H E S
Sbjct: 71 KFYVDPLSLSAWTCFFSTLQCAALAVFLVPDANAWKIHSLFELS 114
>08_02_0052 +
11699468-11699700,11699799-11699916,11699991-11700659,
11700741-11700842,11700921-11701181,11701838-11702009,
11702128-11702528,11703171-11703587
Length = 790
Score = 32.3 bits (70), Expect = 2.4
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
Query: 854 ASENSTGVSIQGKVDLMSGV---KSMDKRLEITVI-PEAPCLQMTFSETNPDIISGEIRT 909
AS N+T + G +L G+ K++ R E+ V+ PE P +TF + SG
Sbjct: 352 ASANTTKIISTGPSNLHDGLLQLKNLQMRAELQVMSPEVPVCDVTFLRQSVQFGSGLWCV 411
Query: 910 VDVELTNVGPVDMK 923
VDV + + P + K
Sbjct: 412 VDVSIDTILPGESK 425
>07_03_0272 -
16143201-16144937,16145346-16145351,16145406-16145535,
16145613-16145773,16146608-16146725,16147328-16147441,
16149378-16149469,16149906-16149986,16150168-16150473
Length = 914
Score = 31.9 bits (69), Expect = 3.2
Identities = 35/137 (25%), Positives = 60/137 (43%), Gaps = 15/137 (10%)
Query: 455 AGALEMAAISAFMAGDSNRKTHGYLEESIVTYLNTCRMVQYAVRATLLSVICL-TSSGLH 513
A A M ++FM SNR+++G ++ T N M+ Y++ T C+ S+ LH
Sbjct: 655 AAAFPMDNPASFMQPCSNRQSNGQVQ----TVANDIGMLPYSLEHT----DCIGQSTDLH 706
Query: 514 GEAAKQLIRMTSEDSDLRSAMLLEQAALCFLSGPGTKAMCRKYAF-----HMVLAGHRFS 568
+ + T S L+ L++Q+ L K + +F + +L H F+
Sbjct: 707 SLDNNRFSQPTHFPSPLQEQQLVDQSN-SVLYDELHKNLYSDVSFQTKGNNSILEQHSFA 765
Query: 569 KAGQKKHAYRCYKQAHQ 585
+G H Y + Q HQ
Sbjct: 766 SSGSMDHRYNRFPQEHQ 782
>09_04_0187 -
15403048-15403237,15403808-15403959,15404052-15404210,
15404422-15404562
Length = 213
Score = 31.5 bits (68), Expect = 4.3
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 449 SAWLCYAGALEMAAISAFMAGDSNR-KTHGYLEES 482
SAW C+ AL+ AA++ F+A D + K H E S
Sbjct: 61 SAWTCFFSALQSAALAVFLAPDLDAWKIHSLFELS 95
>04_04_1242 - 32016553-32016857,32017628-32017784,32017871-32018089,
32018184-32018470,32018629-32019934,32020021-32020178,
32020250-32020335,32023106-32023173,32023297-32023340,
32023418-32023490,32023605-32023684,32023774-32023867,
32023981-32024151,32024463-32024557,32025049-32025128,
32025137-32025333,32025896-32026183
Length = 1235
Score = 31.1 bits (67), Expect = 5.6
Identities = 32/123 (26%), Positives = 60/123 (48%), Gaps = 13/123 (10%)
Query: 904 SGEIRTVDVELTNVGPVDMKNVFI-AVSHPECVSVVTPDNVVDDFKILYDEKFREITPNS 962
S E R +D+++T+V P DM+++ ++S VS V + + L +F + P+
Sbjct: 824 SKEARFIDIDITHVMPYDMRDMECHSLSVSAKVSGVRLGGGMSYTESLL-HRFGILGPDG 882
Query: 963 GHPD----SIADITSPPYSKF-----MIDKKSSFIDSADNTFNQ--DIEKRSGLLQSMFV 1011
G + ++ D++S P +K + DK+ +S DN +N D+E L S+ +
Sbjct: 883 GPGEGLLRTLKDLSSGPLAKLFSPSHLTDKEDGMPNSKDNDYNSKFDLEVPDDLDVSIEL 942
Query: 1012 LRW 1014
W
Sbjct: 943 RNW 945
>04_04_1035 + 30283456-30283536,30284823-30285359,30285508-30286512,
30286718-30287042,30287563-30287818,30287901-30288117,
30288743-30289095,30289330-30289833,30291267-30292467,
30292614-30292970,30293258-30293495,30294083-30295125,
30295234-30296649,30296731-30296855,30297036-30297314,
30297352-30297382,30298957-30299022,30299447-30299689,
30299848-30299898,30299980-30300071,30300182-30300249,
30300515-30300600,30300720-30300824,30300994-30301127,
30302403-30302436,30302620-30302892,30303019-30303288,
30303384-30303974,30304065-30304214
Length = 3376
Score = 31.1 bits (67), Expect = 5.6
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Query: 405 SAVVYTNDCPELQLRRLGDLWFLCGQWQRAFDTYHTAKREFYADSAWLCYAGAL 458
+ +VY C +L+ GD + L W A D Y AK YA +C G L
Sbjct: 1691 AGMVYMEKCGNSRLKDAGDCFELSACWSLAADAYFRAK--CYAKCLSMCSKGKL 1742
>04_04_0416 +
25042937-25043350,25044038-25044238,25044343-25044525,
25044975-25045084,25045317-25045376,25045620-25045911,
25046780-25046967,25047275-25048149,25048846-25049805,
25050025-25050068,25050860-25050925,25051176-25051364
Length = 1193
Score = 31.1 bits (67), Expect = 5.6
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 882 ITVIPEAPCLQMTFSETNPDII--SGEIRTVDVELTNVGPVDMKNVFIAVSHPECVSVVT 939
I+V+P P L + I+ GEIR V + LTN G V ++ +A+S SV++
Sbjct: 653 ISVVPPLPLLVANVVGGDGSILLYEGEIRDVLITLTNAGTVPVEEANVALSGKNQDSVIS 712
>07_03_1339 + 25879246-25881154,25881502-25881696,25881777-25881928,
25882147-25882607,25883723-25883810,25884066-25884135,
25884288-25884361,25884456-25884524,25884647-25884724,
25884946-25885070,25885168-25885240,25885508-25885566,
25885650-25886027,25886134-25886236,25886332-25886544
Length = 1348
Score = 30.3 bits (65), Expect = 9.9
Identities = 25/96 (26%), Positives = 45/96 (46%), Gaps = 10/96 (10%)
Query: 921 DMKNVFIAVS-HPECVSVVTPDNV-----VDDFKILYDEKFREITPNSGHPDSIADITSP 974
D+++ VS P+ + V DNV D+F + + K + P+S +P S+ D
Sbjct: 400 DLESQIKCVSISPDDILVNKNDNVEGNMNADNFDLGLESKQDIVKPSSSNPSSVGDDLQT 459
Query: 975 PYSKFMIDKKSSFIDSADNTFNQDIEKRSGLLQSMF 1010
P DK+ S ID + + ++K+ G S++
Sbjct: 460 PDD----DKEISLIDMSLQDTDMSLKKKEGSPDSIY 491
>06_03_0022 - 15536811-15536899,15537485-15537664,15537706-15537982,
15538680-15538883,15539431-15539496,15539933-15539953,
15541622-15541731,15543244-15544236,15544928-15544955,
15545035-15545093,15545177-15545204,15545453-15545475,
15545784-15545853,15546980-15547033,15547127-15547169,
15548126-15548175
Length = 764
Score = 30.3 bits (65), Expect = 9.9
Identities = 24/67 (35%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 980 MIDKKSSFIDSADNTFNQDIEKRSGLLQSMFVLRWKAQDETTGRSAVGQHCLWLDCFNKV 1039
+I K F+DS + + D G +M L A D GRS VGQ C L C N V
Sbjct: 76 VIALKVYFMDSFQHGMDADKHHIFGERGNMIQLNMCASD---GRSVVGQRCQRLGCNNVV 132
Query: 1040 QYGEKVL 1046
+ G+ +L
Sbjct: 133 E-GQTLL 138
>06_02_0177 + 12644270-12644581,12645717-12646054,12646291-12646489
Length = 282
Score = 30.3 bits (65), Expect = 9.9
Identities = 32/130 (24%), Positives = 54/130 (41%), Gaps = 10/130 (7%)
Query: 663 LPLPVAEVSMTRVACAGPAPLSSPRRCGATSLSVQAPRRDPHEERVWRTLE---EMLVQV 719
+PLP + + + + ++S R + S S +P + +E + R ++ E +VQ
Sbjct: 37 VPLPRFRAAAAAASSSPSSGITSRRFLASKSPSSSSPSKASADENLVRVIDSEIECIVQS 96
Query: 720 ARGAVPMIFKPTLDLYDDTTDCHPLVPQGEPIQISVTLWNPLKISLILKDVELLWRFTPL 779
GA +DL +D P P S+TL + I V + L
Sbjct: 97 EEGAASA---KQIDLPED----FPFEIIDNPGDQSITLKREIAGETIKATVYTNFDTQDL 149
Query: 780 NESGDSDDNN 789
NE GD ++NN
Sbjct: 150 NEDGDDNENN 159
>04_04_0559 - 26234106-26235169,26235437-26235452
Length = 359
Score = 30.3 bits (65), Expect = 9.9
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Query: 1014 WKAQDETTGRSAVG---QHCLWLDCFNKVQYGEKVL 1046
W QD+ G +AVG HC W +Q+G ++L
Sbjct: 230 WAPQDDVLGHAAVGCYLTHCGWNSTVEAIQHGVRML 265
>01_05_0341 + 21146571-21146960
Length = 129
Score = 30.3 bits (65), Expect = 9.9
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 331 LSTEVHGAALNNNDIEAIKKFLQEYASKALLPYIEKQISQLSESVANRKGVSRSLLSATK 390
L V +L + D +K ++++A KA++ Y +QIS S A R SR +S+T+
Sbjct: 32 LEFSVGPGSLRDADAGKLKSQIKKWA-KAVVAYA-RQISFGSPRAAARSSSSRRAMSSTR 89
Query: 391 RWFGTGKGGNATG 403
G +GG G
Sbjct: 90 GRDGHAEGGGGGG 102
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.317 0.132 0.395
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,119,596
Number of Sequences: 37544
Number of extensions: 1417676
Number of successful extensions: 3276
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 3263
Number of HSP's gapped (non-prelim): 23
length of query: 1210
length of database: 14,793,348
effective HSP length: 90
effective length of query: 1120
effective length of database: 11,414,388
effective search space: 12784114560
effective search space used: 12784114560
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 65 (30.3 bits)
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