Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA003473-TA|BGIBMGA003473-PA|IPR001091|Site-specific
DNA-methyltransferase (cytosine-N4-specific)
(1210 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U88173-5|AAM15574.1| 1280|Caenorhabditis elegans Hypothetical pr... 122 2e-27
U88173-6|AAM15575.1| 1282|Caenorhabditis elegans Hypothetical pr... 120 5e-27
Z82268-8|CAB05201.1| 1222|Caenorhabditis elegans Hypothetical pr... 33 1.2
AL023835-16|CAA19496.1| 1222|Caenorhabditis elegans Hypothetical... 33 1.2
Z68005-3|CAA91990.1| 1227|Caenorhabditis elegans Hypothetical pr... 32 2.2
U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter... 32 2.2
AF043699-7|AAK84627.1| 927|Caenorhabditis elegans Dipeptidyl pe... 31 3.8
AF043699-6|AAB97564.1| 931|Caenorhabditis elegans Dipeptidyl pe... 31 3.8
AF099001-6|AAC68738.2| 661|Caenorhabditis elegans Lateral signa... 31 5.0
Z81465-4|CAB03866.3| 613|Caenorhabditis elegans Hypothetical pr... 31 6.6
AL032646-13|CAA21687.3| 613|Caenorhabditis elegans Hypothetical... 31 6.6
Z50071-4|CAA90409.2| 1301|Caenorhabditis elegans Hypothetical pr... 30 8.7
>U88173-5|AAM15574.1| 1280|Caenorhabditis elegans Hypothetical
protein F46F11.9a protein.
Length = 1280
Score = 122 bits (293), Expect = 2e-27
Identities = 82/261 (31%), Positives = 126/261 (48%), Gaps = 13/261 (4%)
Query: 344 DIEAIKKFLQEYASKALLPYIEKQISQLSESVANRKGVSRSLLSATKRWFGTGKGGNATG 403
D +A++ L ++ L+PY+EK++ L E+ +KG+ +S S KRWFG+G A
Sbjct: 304 DAKAVQAILSKFLDVCLIPYVEKEMRFLYETAGQKKGIGKSFTSM-KRWFGSG---TALS 359
Query: 404 NSA--VVYTNDCPELQLRRLGDLWFLCGQWQRAFDTYHTAKREFYADSAWLCYAGALEMA 461
N A + Y D E+Q RRL DL + G AF+ Y KR+ AD A +A ALEM
Sbjct: 360 NMATPITYAWDSSEMQTRRLADLLLMFGFPNSAFEQYRGLKRDLEADKAMAAHAVALEMC 419
Query: 462 AISAFMAG---DSNRKTHGYLEESIVTYLNTCRMVQYAVRATLLSVICLTSSGLHGEAAK 518
++ A ++N+ YLE + + + +R + GLH EAA
Sbjct: 420 CVALHSAQPQLNANQFMIKYLETPVSLLIEHAKRYPSILRCAFNIADIYSDLGLHKEAAL 479
Query: 519 QLIRMTSEDSDLRSAMLLEQAALCFLSGPGTKAMCRKYAFHMVLAGHRFSKAGQKKHAYR 578
L +++S + D A+ AA F M RK +FH VLA +RFS A ++
Sbjct: 480 NLAKVSSIEGDHLVAVAQTLAAEQFEKA----GMGRKASFHRVLAANRFSNAAIPALSFD 535
Query: 579 CYKQAHQVYSGSGWRLATDHV 599
CY+ A + W + +H+
Sbjct: 536 CYRLALPAFDKKHWGVLDEHL 556
Score = 53.6 bits (123), Expect = 8e-07
Identities = 63/229 (27%), Positives = 104/229 (45%), Gaps = 33/229 (14%)
Query: 17 SPIVAVL---CSQKVENIVSKNNVTFPELLQPFCNLDWEGQFREPGGNTCVIKNMKLIVR 73
SP++A++ CSQK + ++ + + PF + E Q REP N + ++L +R
Sbjct: 7 SPLIALISSECSQKHAH--NRGFKSLSHFIFPFTS--HECQVREPIDNLKASQRIRLDIR 62
Query: 74 DVNWKPLQPTEARRQLNNAVLYNYNDKTISVELAGRSFLIPQSTHWFDAWRETYLDVQFP 133
D++ L +VL + ++ + QS F R+ P
Sbjct: 63 DIS-------SDGHLLTLSVL-----PYVLIQALKTCTDVSQSIKLF---RDVLARCSEP 107
Query: 134 SDHEFTKHFLSCIIVGTTDDENVVDTFNGLNQQYAQLQN----VMPP---KLPKWF--NN 184
S+HE H+L+CI V +T+DEN + F+ + Q L N +M P PKW +
Sbjct: 108 SEHESFGHYLACIFVVSTEDENPLGEFSKMIQTQQTLYNTTSTLMIPGHCSTPKWAAPHA 167
Query: 185 CILKTYLLLHDVSV--VSKERADAVFDTLKHAFGPNSCFMLPINSKSTS 231
+ Y+LLHD S ER D + + +G ++C ML ++S S S
Sbjct: 168 KTPRHYILLHDSRSPRSSTERRDELLAQMCATYGNDNCQMLQLDSDSES 216
Score = 35.1 bits (77), Expect = 0.31
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 7/71 (9%)
Query: 1070 KNIKKDNVVMFKMEHS-----KQINHDFNERRLCIIPVTLSIVN--CYGVPVRVFINMSK 1122
K +KKD+ V+ + S K+I+H+F+ +C +P+TL I N PV V I +S
Sbjct: 1131 KTLKKDDSVLSSLRISCETTAKEISHNFSASHICELPITLLIQNKDLQRRPVSVSIKLSS 1190
Query: 1123 QKNRGTSGREL 1133
+ G L
Sbjct: 1191 KVREPVDGIHL 1201
>U88173-6|AAM15575.1| 1282|Caenorhabditis elegans Hypothetical
protein F46F11.9b protein.
Length = 1282
Score = 120 bits (290), Expect = 5e-27
Identities = 83/263 (31%), Positives = 128/263 (48%), Gaps = 15/263 (5%)
Query: 344 DIEAIKKFLQEYASKALLPYIEKQISQLSESVANRKGVSRSLLSATKRWFGTGKGGNATG 403
D +A++ L ++ L+PY+EK++ L E+ +KG+ +S S KRWFG+G A
Sbjct: 304 DAKAVQAILSKFLDVCLIPYVEKEMRFLYETAGQKKGIGKSFTSM-KRWFGSG---TALS 359
Query: 404 NSA--VVYTNDCPELQLRRLGDLWFLCGQWQRAFDTYHTAKREFYADSAWLCYAGALEMA 461
N A + Y D E+Q RRL DL + G AF+ Y KR+ AD A +A ALEM
Sbjct: 360 NMATPITYAWDSSEMQTRRLADLLLMFGFPNSAFEQYRGLKRDLEADKAMAAHAVALEMC 419
Query: 462 AISAFMAG---DSNRKTHGYLEESIVTYLNTCRMVQY--AVRATLLSVICLTSSGLHGEA 516
++ A ++N+ YLE + + + +Y +R + GLH EA
Sbjct: 420 CVALHSAQPQLNANQFMIKYLETPVSLLIEHAKFRRYPSILRCAFNIADIYSDLGLHKEA 479
Query: 517 AKQLIRMTSEDSDLRSAMLLEQAALCFLSGPGTKAMCRKYAFHMVLAGHRFSKAGQKKHA 576
A L +++S + D A+ AA F M RK +FH VLA +RFS A +
Sbjct: 480 ALNLAKVSSIEGDHLVAVAQTLAAEQFEKA----GMGRKASFHRVLAANRFSNAAIPALS 535
Query: 577 YRCYKQAHQVYSGSGWRLATDHV 599
+ CY+ A + W + +H+
Sbjct: 536 FDCYRLALPAFDKKHWGVLDEHL 558
Score = 53.6 bits (123), Expect = 8e-07
Identities = 63/229 (27%), Positives = 104/229 (45%), Gaps = 33/229 (14%)
Query: 17 SPIVAVL---CSQKVENIVSKNNVTFPELLQPFCNLDWEGQFREPGGNTCVIKNMKLIVR 73
SP++A++ CSQK + ++ + + PF + E Q REP N + ++L +R
Sbjct: 7 SPLIALISSECSQKHAH--NRGFKSLSHFIFPFTS--HECQVREPIDNLKASQRIRLDIR 62
Query: 74 DVNWKPLQPTEARRQLNNAVLYNYNDKTISVELAGRSFLIPQSTHWFDAWRETYLDVQFP 133
D++ L +VL + ++ + QS F R+ P
Sbjct: 63 DIS-------SDGHLLTLSVL-----PYVLIQALKTCTDVSQSIKLF---RDVLARCSEP 107
Query: 134 SDHEFTKHFLSCIIVGTTDDENVVDTFNGLNQQYAQLQN----VMPP---KLPKWF--NN 184
S+HE H+L+CI V +T+DEN + F+ + Q L N +M P PKW +
Sbjct: 108 SEHESFGHYLACIFVVSTEDENPLGEFSKMIQTQQTLYNTTSTLMIPGHCSTPKWAAPHA 167
Query: 185 CILKTYLLLHDVSV--VSKERADAVFDTLKHAFGPNSCFMLPINSKSTS 231
+ Y+LLHD S ER D + + +G ++C ML ++S S S
Sbjct: 168 KTPRHYILLHDSRSPRSSTERRDELLAQMCATYGNDNCQMLQLDSDSES 216
Score = 35.1 bits (77), Expect = 0.31
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 7/71 (9%)
Query: 1070 KNIKKDNVVMFKMEHS-----KQINHDFNERRLCIIPVTLSIVN--CYGVPVRVFINMSK 1122
K +KKD+ V+ + S K+I+H+F+ +C +P+TL I N PV V I +S
Sbjct: 1133 KTLKKDDSVLSSLRISCETTAKEISHNFSASHICELPITLLIQNKDLQRRPVSVSIKLSS 1192
Query: 1123 QKNRGTSGREL 1133
+ G L
Sbjct: 1193 KVREPVDGIHL 1203
>Z82268-8|CAB05201.1| 1222|Caenorhabditis elegans Hypothetical protein
Y37A1B.1a protein.
Length = 1222
Score = 33.1 bits (72), Expect = 1.2
Identities = 41/140 (29%), Positives = 57/140 (40%), Gaps = 15/140 (10%)
Query: 942 NVVDDFKILYDEKFREITPNSGHPDSIADITSPPYSKFMIDKKSSFIDSADNTFNQDIEK 1001
NVV K+L + S + ++ I +K IDKK IDS + N+ + +
Sbjct: 1050 NVVQKMKLLKQVEKERDEAKSTVSEQLSLIEQLREAKAEIDKKKKDIDSHYHKSNKKLNE 1109
Query: 1002 RSGLLQSMFVLRWKAQDETTGRSAVGQHCLWLDCFNKVQYGEKVLVTDNNPPLPLDENES 1061
S L+S QDE + Q C EKV+ PP P E +S
Sbjct: 1110 TSAQLKS-------TQDENSALKQALQDCK-RHADRIFSVVEKVM-----PPPPKKEEKS 1156
Query: 1062 KLDVTENKKNIKKDNVVMFK 1081
K D E +K KKD+ V K
Sbjct: 1157 KKD--EKEKTDKKDDKVSEK 1174
>AL023835-16|CAA19496.1| 1222|Caenorhabditis elegans Hypothetical
protein Y37A1B.1a protein.
Length = 1222
Score = 33.1 bits (72), Expect = 1.2
Identities = 41/140 (29%), Positives = 57/140 (40%), Gaps = 15/140 (10%)
Query: 942 NVVDDFKILYDEKFREITPNSGHPDSIADITSPPYSKFMIDKKSSFIDSADNTFNQDIEK 1001
NVV K+L + S + ++ I +K IDKK IDS + N+ + +
Sbjct: 1050 NVVQKMKLLKQVEKERDEAKSTVSEQLSLIEQLREAKAEIDKKKKDIDSHYHKSNKKLNE 1109
Query: 1002 RSGLLQSMFVLRWKAQDETTGRSAVGQHCLWLDCFNKVQYGEKVLVTDNNPPLPLDENES 1061
S L+S QDE + Q C EKV+ PP P E +S
Sbjct: 1110 TSAQLKS-------TQDENSALKQALQDCK-RHADRIFSVVEKVM-----PPPPKKEEKS 1156
Query: 1062 KLDVTENKKNIKKDNVVMFK 1081
K D E +K KKD+ V K
Sbjct: 1157 KKD--EKEKTDKKDDKVSEK 1174
>Z68005-3|CAA91990.1| 1227|Caenorhabditis elegans Hypothetical
protein F59F3.1 protein.
Length = 1227
Score = 32.3 bits (70), Expect = 2.2
Identities = 14/32 (43%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 931 HPECVSV-VTPDNVVDDFKILYDEKFREITPN 961
H EC+S+ + P +VV ++K E+F+EI PN
Sbjct: 481 HIECISISIPPADVVFEYKTKNSEQFQEIEPN 512
>U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 6 protein.
Length = 1254
Score = 32.3 bits (70), Expect = 2.2
Identities = 25/96 (26%), Positives = 44/96 (45%), Gaps = 4/96 (4%)
Query: 198 VVSKERADAVFDTLKHAFGPNSCFMLPINSKSTS-DANVPADLWSQYIKRSPDSTSDVAS 256
VV ++++V D F S + P TS + V D + + SPD+T+++AS
Sbjct: 148 VVINSKSESVTDMSTTRF---STTLSPTTELLTSPETLVSTDSSTSTEQTSPDNTTEIAS 204
Query: 257 IFSNLATTPAEQAPIFPSQNIIERGEDTLTGSVQES 292
TT A + PS + + ++T ++ ES
Sbjct: 205 PMETNTTTEATTTSVEPSVSTLASEDETTVTAIAES 240
>AF043699-7|AAK84627.1| 927|Caenorhabditis elegans Dipeptidyl
peptidase four (iv)family protein 3, isoform b protein.
Length = 927
Score = 31.5 bits (68), Expect = 3.8
Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 505 ICLTS--SGLHGEAAKQLIRMTSEDSDLRSAMLLEQAALCFLSGPGTKAMCRKYAF 558
IC++ +G H + + I SE ++ + A+ L+ C+++ G+ A CR Y+F
Sbjct: 571 ICVSHYRTGQHAQLTESGICFKSERANGKLALDLDHGFACYMTSVGSPAECRFYSF 626
>AF043699-6|AAB97564.1| 931|Caenorhabditis elegans Dipeptidyl
peptidase four (iv)family protein 3, isoform a protein.
Length = 931
Score = 31.5 bits (68), Expect = 3.8
Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 505 ICLTS--SGLHGEAAKQLIRMTSEDSDLRSAMLLEQAALCFLSGPGTKAMCRKYAF 558
IC++ +G H + + I SE ++ + A+ L+ C+++ G+ A CR Y+F
Sbjct: 575 ICVSHYRTGQHAQLTESGICFKSERANGKLALDLDHGFACYMTSVGSPAECRFYSF 630
>AF099001-6|AAC68738.2| 661|Caenorhabditis elegans Lateral
signaling target protein 2 protein.
Length = 661
Score = 31.1 bits (67), Expect = 5.0
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Query: 226 NSKSTSDANVPADLWSQYIKRSPDSTSDVASIFSNLATTPAEQAPIFPSQNIIERGEDTL 285
N++ ++P+D S DS+S+ S+ S+ +P + SQ E G+D
Sbjct: 319 NNQRVWMCDMPSDSTSSLDSSVQDSSSETTSLASSALASPHSGSEENVSQIENEEGDDEA 378
Query: 286 TGSVQESVHPLT-SPET 301
G+ S + +T SPET
Sbjct: 379 IGTNSNSSNEVTESPET 395
>Z81465-4|CAB03866.3| 613|Caenorhabditis elegans Hypothetical
protein Y54E2A.1 protein.
Length = 613
Score = 30.7 bits (66), Expect = 6.6
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 246 RSPDSTSDVASIFSNLATTPAEQAPIFPSQNIIERGEDTLTGSVQESVHPLTSP 299
RSP SD +S+F + +P Q+ S +ER D L SV+++V P T P
Sbjct: 560 RSPTGASDTSSLFPSRTRSPTLQSN--TSGQSMERTTDRL--SVRDAVRPKTPP 609
>AL032646-13|CAA21687.3| 613|Caenorhabditis elegans Hypothetical
protein Y54E2A.1 protein.
Length = 613
Score = 30.7 bits (66), Expect = 6.6
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 246 RSPDSTSDVASIFSNLATTPAEQAPIFPSQNIIERGEDTLTGSVQESVHPLTSP 299
RSP SD +S+F + +P Q+ S +ER D L SV+++V P T P
Sbjct: 560 RSPTGASDTSSLFPSRTRSPTLQSN--TSGQSMERTTDRL--SVRDAVRPKTPP 609
>Z50071-4|CAA90409.2| 1301|Caenorhabditis elegans Hypothetical
protein T07D4.3 protein.
Length = 1301
Score = 30.3 bits (65), Expect = 8.7
Identities = 32/134 (23%), Positives = 52/134 (38%), Gaps = 8/134 (5%)
Query: 226 NSKSTSDA--NVPADLWSQYIKRSPDSTSDVASIFSNLATTPAEQAPIFPSQNIIERGED 283
NS + DA N D ++ SD+ ++ S+ + + + GED
Sbjct: 52 NSTNKKDAATNAAQDFCQYLVREGKMQQSDIPTLTSSSLEASSTWQDS-ETATMFCGGED 110
Query: 284 TLTGSVQESVHPLTSPETDVYDNANSLQ--THXXXXXXXXXXXXA-KGIDLSTEVHGAAL 340
S QES P+ +NA TH A + +DL +E+HG
Sbjct: 111 G--NSFQESQQPIPQKRFPWSNNAYQRNEGTHEQYITQKAEEIAASETVDLKSEIHGGWT 168
Query: 341 NNNDIEAIKKFLQE 354
N +A+ +FLQ+
Sbjct: 169 MENSKKALNEFLQK 182
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.317 0.132 0.395
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,208,774
Number of Sequences: 27539
Number of extensions: 1249182
Number of successful extensions: 3077
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 3052
Number of HSP's gapped (non-prelim): 26
length of query: 1210
length of database: 12,573,161
effective HSP length: 90
effective length of query: 1120
effective length of database: 10,094,651
effective search space: 11306009120
effective search space used: 11306009120
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 65 (30.3 bits)
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