GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003473-TA|BGIBMGA003473-PA|IPR001091|Site-specific
DNA-methyltransferase (cytosine-N4-specific)
         (1210 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    29   0.17 
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    25   4.9  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    25   4.9  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    24   8.6  

>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 29.5 bits (63), Expect = 0.17
 Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 6/61 (9%)

Query: 15  SFSPIVAVLCSQKVENIVSKNNVTFPELLQPFCNLDWEGQ-FREPGGNTCVIKNMKLIVR 73
           SF P      SQ V  ++ +N V F  LL       W  + F E GGN     N+++IV+
Sbjct: 297 SFVPFSIERSSQSVAEVMDRNGVLFFGLLSDLAIGCWNSEHFFEYGGN-----NIEIIVK 351

Query: 74  D 74
           D
Sbjct: 352 D 352


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 20/87 (22%), Positives = 31/87 (35%), Gaps = 4/87 (4%)

Query: 194 HDVSVVSKERADAVFDTLKHAFGPNSCFMLPINSKSTSDANVPADLWSQYIKRSPD---- 249
           +   V  +E  +      KH  G +SC   P +SKS+            Y +   D    
Sbjct: 253 YQADVEKQECTECPIGKFKHEAGSHSCEACPAHSKSSDYGFTECRCDPGYFRAEKDPKKM 312

Query: 250 STSDVASIFSNLATTPAEQAPIFPSQN 276
             +   S   NL     +Q+ +F S N
Sbjct: 313 PCTQPPSAPQNLTVNFVDQSTVFLSWN 339


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 11/33 (33%), Positives = 17/33 (51%)

Query: 152 DDENVVDTFNGLNQQYAQLQNVMPPKLPKWFNN 184
           D  N +D  N +N+Q  +    +  KL K+ NN
Sbjct: 526 DRTNRMDRMNRMNRQMNEYMMALSMKLQKFINN 558


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 8/17 (47%), Positives = 13/17 (76%)

Query: 1039 VQYGEKVLVTDNNPPLP 1055
            V+YG+ V++ + N PLP
Sbjct: 1095 VKYGKLVMIHEENAPLP 1111


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.132    0.395 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 334,887
Number of Sequences: 429
Number of extensions: 14189
Number of successful extensions: 25
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 22
Number of HSP's gapped (non-prelim): 4
length of query: 1210
length of database: 140,377
effective HSP length: 66
effective length of query: 1144
effective length of database: 112,063
effective search space: 128200072
effective search space used: 128200072
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 49 (23.8 bits)