GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003472-TA|BGIBMGA003472-PA|IPR000014|PAS,
IPR001092|Basic helix-loop-helix dimerisation region bHLH,
IPR001610|PAC motif, IPR013767|PAS fold, IPR013655|PAS fold-3,
IPR011598|Helix-loop-helix DNA-binding, IPR001067|Nuclear translocator
         (638 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    97   3e-22
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     74   3e-15
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             44   3e-06
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    25   1.4  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    25   2.5  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 97.5 bits (232), Expect = 3e-22
 Identities = 87/337 (25%), Positives = 144/337 (42%), Gaps = 39/337 (11%)

Query: 83  VPTCSALARKPDKLTILRMAVAHMKALRGTGNTSTDGTYKPSFLTDQELKHLILEAADGF 142
           VPT S L +KPD  T+    V         G+T TD     +  T+  L   I +A +GF
Sbjct: 108 VPTKSILEKKPDVTTV--ELVDATDPGEHNGDTVTDVEAGLASRTNP-LDDSISQANEGF 164

Query: 143 LFVVSCDTGRIIYVSDSIAPVLNYSQGEWYSSCLYDQVHPDDVEKVREQLSTQEPQNTGR 202
             V+S   G ++Y + SI   L Y +  W      D VHP D   + +Q+          
Sbjct: 165 CAVISMHDGLVLYTTPSICTALGYLKDAWIGRSFIDYVHPKDKATLADQI---------- 214

Query: 203 ILDLKTGTVKKEGHQSSMRQVMGSRRGFICRMRVGGTAEGAHLGRLRARNSLGASHDGHN 262
               K G V  +  +   + + G R    C ++           R  A  S+      + 
Sbjct: 215 ----KNGIVSPQ--EERPKGINGRRASLFCGLQ--------KYTRSFAHQSINKEARSNL 260

Query: 263 YAVVHCTGYIKNWPPTGMQMDRPVEDELHSSHCCLVAIGRLQVTSTPNNSENSLCNGGVE 322
           Y   H T   +++       DR  E + H +    + +    V S     E ++ +    
Sbjct: 261 YLPFHLTLSFRDF------RDRTTEQQ-HKA--MFLVVTAQPVHSAYKAPEETIISS--V 309

Query: 323 FVSRHSVDGRFTFADQRATQVIGYAPADLLGKLCYEFYHPEDQQHMRDNFDQVLKLKG-Q 381
           F +RH+     +  D    Q  GY P D++G+  ++FYHPED   ++D ++ V+KL+G  
Sbjct: 310 FTTRHNATCYLSHVDPDVVQYFGYLPQDMVGRSLFDFYHPEDLPFIKDIYETVIKLEGAS 369

Query: 382 IISLMYRFRTKSREWVWLRTSAFAFLNPYNDDVEYIV 418
             S  YRF  ++ ++V L T   +F+NP+   +E++V
Sbjct: 370 FRSKPYRFGIQNGDYVVLETEWSSFINPWTKKLEFVV 406


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 74.1 bits (174), Expect = 3e-15
 Identities = 33/97 (34%), Positives = 57/97 (58%), Gaps = 1/97 (1%)

Query: 323 FVSRHSVDGRFTFADQRATQVIGYAPADLLGKLCYEFYHPEDQQHMRDNFDQVLKLKG-Q 381
           F +RH+     +  D    Q  GY P D++G+  ++FYHPED   ++D ++ V+KL+G  
Sbjct: 16  FTTRHNATCYLSHVDPDVVQYFGYLPQDMVGRSLFDFYHPEDLPFIKDIYETVIKLEGAS 75

Query: 382 IISLMYRFRTKSREWVWLRTSAFAFLNPYNDDVEYIV 418
             S  YRF  ++ ++V L T   +F+NP+   +E++V
Sbjct: 76  FRSKPYRFGIQNGDYVVLETEWSSFINPWTKKLEFVV 112


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 44.4 bits (100), Expect = 3e-06
 Identities = 32/110 (29%), Positives = 48/110 (43%), Gaps = 8/110 (7%)

Query: 83  VPTCSALARKPDKLTILRMAVAHMKALRGTGNTSTDGTYKPSFLTDQELKHLILEAADGF 142
           VPT S L +KP+ +                G+T TD     +  T+  L   I +A +GF
Sbjct: 108 VPTKSILEKKPELVDATDPG-------EHNGDTVTDVEAGLASRTNP-LDDSISQANEGF 159

Query: 143 LFVVSCDTGRIIYVSDSIAPVLNYSQGEWYSSCLYDQVHPDDVEKVREQL 192
             V+S   G ++Y + SI   L Y +  W      D VHP D   + +Q+
Sbjct: 160 CAVISMHDGLVLYTTPSICTALGYLKDAWIGRSFIDYVHPKDKATLADQI 209



 Score = 25.4 bits (53), Expect = 1.4
 Identities = 16/73 (21%), Positives = 30/73 (41%), Gaps = 2/73 (2%)

Query: 298 VAIGRLQVTSTPNNSENSLCNGGVEFVSRHSVDGRFTFADQRATQVIGYAPADLLGKLCY 357
           V  G    T+  ++S +    G    +S H  DG   +        +GY     +G+   
Sbjct: 137 VEAGLASRTNPLDDSISQANEGFCAVISMH--DGLVLYTTPSICTALGYLKDAWIGRSFI 194

Query: 358 EFYHPEDQQHMRD 370
           ++ HP+D+  + D
Sbjct: 195 DYVHPKDKATLAD 207


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 25.4 bits (53), Expect = 1.4
 Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 3/65 (4%)

Query: 291 HSSHCCLVAIGRLQVTSTPNNSEN--SLCNGGVE-FVSRHSVDGRFTFADQRATQVIGYA 347
           HS  CCL       V    N SEN  + C G  E + S+H+      +  + ++ +    
Sbjct: 351 HSDSCCLCLDSMNAVIRNFNESENRRNSCLGSTETYYSKHNTQQFTQYIPESSSNLQEKT 410

Query: 348 PADLL 352
             DLL
Sbjct: 411 KIDLL 415


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 24.6 bits (51), Expect = 2.5
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 1/58 (1%)

Query: 52  KERFASRENHCEIERRRRNKMTAYITELSDMVPTCSALARKPDKLTILRMAVAHMKAL 109
           K+   SR  H E+E+ RR  +   + +L  +VP     +R    L +L  A   +K+L
Sbjct: 44  KKSQGSRTTHNELEKNRRAHLRNCLEKLKVLVPLGPETSRH-TTLGLLTKAKRFIKSL 100


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.133    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,803
Number of Sequences: 429
Number of extensions: 6054
Number of successful extensions: 32
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 20
Number of HSP's gapped (non-prelim): 10
length of query: 638
length of database: 140,377
effective HSP length: 62
effective length of query: 576
effective length of database: 113,779
effective search space: 65536704
effective search space used: 65536704
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 47 (23.0 bits)