GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003471-TA|BGIBMGA003471-PA|undefined
         (130 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        24   0.47 
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    23   0.83 
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   1.9  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   1.9  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       21   4.4  

>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 24.2 bits (50), Expect = 0.47
 Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 3/43 (6%)

Query: 50  PQQASIAASTGPSQPTHHASWPYGTHLHCLIAQHFQAQSRLTA 92
           PQ +  +AST P+  T  + +PY   +    A H   Q +  A
Sbjct: 69  PQHSGSSASTSPAARTTSSMYPY---VSAAAAHHHHQQQQAVA 108


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 23.4 bits (48), Expect = 0.83
 Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 2/50 (4%)

Query: 55  IAASTGPSQPTHHA-SWPYGTH-LHCLIAQHFQAQSRLTADFEQHWRQSR 102
           +A  +  + PT +A S  Y ++ +  ++ ++ +  S L +D EQH+RQ R
Sbjct: 683 VARRSVANSPTKNADSREYRSNSMGAVMTRNSEMFSSLLSDTEQHFRQHR 732


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 22.2 bits (45), Expect = 1.9
 Identities = 7/11 (63%), Positives = 8/11 (72%)

Query: 65  THHASWPYGTH 75
           T  +SWPY TH
Sbjct: 171 TDFSSWPYDTH 181


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.2 bits (45), Expect = 1.9
 Identities = 11/29 (37%), Positives = 16/29 (55%)

Query: 35  NPRILADKSKSSTVVPQQASIAASTGPSQ 63
           NPRI +  S S++  P     AA+  PS+
Sbjct: 514 NPRIASAPSSSTSSSPPAKGAAAAGQPSK 542


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.0 bits (42), Expect = 4.4
 Identities = 7/16 (43%), Positives = 13/16 (81%)

Query: 113 NFEQHWHLQANLSTDN 128
           NF+++ ++Q N+S DN
Sbjct: 175 NFDKYDNIQVNVSGDN 190


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.128    0.405 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 37,512
Number of Sequences: 429
Number of extensions: 1343
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 130
length of database: 140,377
effective HSP length: 51
effective length of query: 79
effective length of database: 118,498
effective search space:  9361342
effective search space used:  9361342
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.4 bits)
S2: 40 (20.2 bits)