GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003469-TA|BGIBMGA003469-PA|IPR000504|RNA-binding region
RNP-1 (RNA recognition motif), IPR003954|RNA recognition, region 1,
IPR006515|Polyadenylate binding protein, human types 1, 2, 3, 4
         (464 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex det...    28   0.19 
DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.              26   0.77 

>AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex
           determiner protein.
          Length = 385

 Score = 27.9 bits (59), Expect = 0.19
 Identities = 28/139 (20%), Positives = 56/139 (40%), Gaps = 3/139 (2%)

Query: 179 EREKELGEKAKLFANVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSRGFGFVA 238
           E  K + E+ ++  NV  K    +  D +L    EK G  +       +   +R  GF  
Sbjct: 168 EGSKPIFEREEI-KNVLTKINKIEEHDTVLVVNIEKSGNESKKYATSSNSLRNRTHGFQH 226

Query: 239 FEDPDAAERACIELNGKELVEGKPLY--VGRAQKKAERQKELKRKFEQLKSERLTRYQGV 296
                + ER+C     +E  +    Y  +   +KK   ++  ++++ + +      Y+  
Sbjct: 227 TSSRYSRERSCSRDRNREYKKKDRRYEKLHNEKKKLLEERTSRKRYSRSREREQKSYKNE 286

Query: 297 NLYVKNLDDTIDDERLRKE 315
           N Y K  + + +  R R+E
Sbjct: 287 NSYRKYRETSKERSRDRRE 305


>DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.
          Length = 143

 Score = 25.8 bits (54), Expect = 0.77
 Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 3/80 (3%)

Query: 173 RFIPRKEREKELGEKAKLFANVYVKNFGEDFSDEMLKDMFEKYGRITSHKVMYKDDGNSR 232
           R +  K R+K +GE      +V    +GE   DE LK  F     +    VM K +G  R
Sbjct: 33  REMTSKYRKKCIGETKTTIEDVEATEYGEFPEDEKLKCYFNCV--LEKFNVMDKKNGKIR 90

Query: 233 GFGFVAFEDPDAAERACIEL 252
            +  +    P+A +   +E+
Sbjct: 91  -YNLLKKVIPEAFKEIGVEM 109


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.136    0.394 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,661
Number of Sequences: 429
Number of extensions: 5650
Number of successful extensions: 10
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 2
length of query: 464
length of database: 140,377
effective HSP length: 60
effective length of query: 404
effective length of database: 114,637
effective search space: 46313348
effective search space used: 46313348
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 45 (22.2 bits)