GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003467-TA|BGIBMGA003467-PA|IPR001412|Aminoacyl-tRNA
synthetase, class I, IPR002300|Aminoacyl-tRNA synthetase, class Ia,
IPR009080|Aminoacyl-tRNA synthetase, class 1a, anticodon-binding,
IPR002302|Leucyl-tRNA synthetase bacterial/mitochondrial, class Ia
         (725 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           27   0.41 
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    26   1.2  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    25   2.2  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    25   2.9  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   6.6  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   6.6  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   6.6  

>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 27.5 bits (58), Expect = 0.41
 Identities = 10/28 (35%), Positives = 17/28 (60%)

Query: 181 NLQRHWIGDCDGTVVTFKLNVDGTMKLF 208
           N + H +G+CDG    F++ VD   +L+
Sbjct: 233 NWEWHTVGNCDGLTSVFRIQVDECDRLW 260


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 25.8 bits (54), Expect = 1.2
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)

Query: 549 ADVPPGTP-RRWSDASSISSRPIPQALMNNIPPEVY 583
           ++V P +P R W   S I  RPIP++    + P  Y
Sbjct: 909 SNVTPRSPGRAWPGDSDIRQRPIPRSDDIRLSPAAY 944


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 25.0 bits (52), Expect = 2.2
 Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)

Query: 392 NAKRETDTMDTFVDSSWYFYRF-LDPK 417
           N K +  T + +V+ SWY Y+   DPK
Sbjct: 65  NLKNQIMTTNLWVEQSWYDYKLKWDPK 91


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 24.6 bits (51), Expect = 2.9
 Identities = 12/47 (25%), Positives = 22/47 (46%)

Query: 86  ISTCNPHYYKWTQYIFLKLLENGLAYQCKAEVNWDPADQTVLADEQV 132
           +S+ N +Y    Q++  +   N + YQ K  + W  A    ++D  V
Sbjct: 268 LSSHNLNYVNTEQFVKSQYQANNVHYQGKENILWTQASAKGISDNGV 314


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.4 bits (48), Expect = 6.6
 Identities = 10/27 (37%), Positives = 16/27 (59%), Gaps = 1/27 (3%)

Query: 392 NAKRETDTMDTFVDSSWYFYRF-LDPK 417
           N K +  T + +V+ SWY Y+   +PK
Sbjct: 69  NLKNQIMTTNLWVEQSWYDYKLRWEPK 95


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.4 bits (48), Expect = 6.6
 Identities = 10/27 (37%), Positives = 16/27 (59%), Gaps = 1/27 (3%)

Query: 392 NAKRETDTMDTFVDSSWYFYRF-LDPK 417
           N K +  T + +V+ SWY Y+   +PK
Sbjct: 69  NLKNQIMTTNLWVEQSWYDYKLRWEPK 95


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.4 bits (48), Expect = 6.6
 Identities = 10/36 (27%), Positives = 20/36 (55%)

Query: 342 PIIYCPKCNIVPVPYEDLPVVLPELDTHSGIQTLQS 377
           P+  C  C    +P++D P + P+ D+ S  ++ +S
Sbjct: 423 PLDKCYFCLDGKLPHDDQPPLSPQSDSSSSSRSAES 458


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.135    0.427 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 231,496
Number of Sequences: 429
Number of extensions: 10692
Number of successful extensions: 24
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 15
Number of HSP's gapped (non-prelim): 9
length of query: 725
length of database: 140,377
effective HSP length: 63
effective length of query: 662
effective length of database: 113,350
effective search space: 75037700
effective search space used: 75037700
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 47 (23.0 bits)