GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003465-TA|BGIBMGA003465-PA|IPR006942|TH1 protein
         (464 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       23   5.4  
AF393493-1|AAL60418.1|  142|Apis mellifera odorant binding prote...    23   7.2  
AF166497-1|AAD51945.1|  142|Apis mellifera putative odorant-bind...    23   7.2  
AY569711-1|AAS86664.1|  401|Apis mellifera complementary sex det...    22   9.5  

>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 11/35 (31%), Positives = 17/35 (48%)

Query: 363 PTLYHCIRFPVVGMGVLVWVECVVTEPSYFKLCTE 397
           PT  H I + + GM ++ W   VV   +Y  +  E
Sbjct: 196 PTYTHEITYSLFGMIMMYWFPLVVIIYTYTSILLE 230


>AF393493-1|AAL60418.1|  142|Apis mellifera odorant binding protein
           ASP2 protein.
          Length = 142

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 9/21 (42%), Positives = 13/21 (61%)

Query: 24  GNEDVIENPEEVLNECLEKFK 44
           GN D I+  + + NEC+E  K
Sbjct: 100 GNADDIQLVKGIANECIENAK 120


>AF166497-1|AAD51945.1|  142|Apis mellifera putative odorant-binding
           protein ASP2 protein.
          Length = 142

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 9/21 (42%), Positives = 13/21 (61%)

Query: 24  GNEDVIENPEEVLNECLEKFK 44
           GN D I+  + + NEC+E  K
Sbjct: 100 GNADDIQLVKGIANECIENAK 120


>AY569711-1|AAS86664.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 9/25 (36%), Positives = 14/25 (56%)

Query: 3   SQYEEERVWDGQNHNNQYEEEGNED 27
           S+YE+ R  DG ++ N  E   + D
Sbjct: 232 SRYEDSRHEDGNSYRNDGERSCSRD 256


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,974
Number of Sequences: 429
Number of extensions: 4682
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 4
length of query: 464
length of database: 140,377
effective HSP length: 60
effective length of query: 404
effective length of database: 114,637
effective search space: 46313348
effective search space used: 46313348
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 45 (22.2 bits)