GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003464-TA|BGIBMGA003464-PA|IPR004841|Amino acid
permease-associated region
         (656 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    24   3.4  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   6.0  

>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 24.2 bits (50), Expect = 3.4
 Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 1/86 (1%)

Query: 282 GVFFPTITGILAG-INMSGDLKNPSVNIPNGSLAAITTGTFLYLMFIITLAATVTREALL 340
           G+ FP+IT I+ G I            I       IT  +FL  + ++ +A  V    ++
Sbjct: 47  GLAFPSITLIVLGSIIFVISFFGCCGAIRESHCMTITFASFLLFILLVQIAVAVYAFIVV 106

Query: 341 KNFSITADISAVIVLLLAGLYVSSMS 366
           KN     +IS     +  G +++S S
Sbjct: 107 KNDDNFRNISEKYQEIFNGYFLNSES 132


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 23.4 bits (48), Expect = 6.0
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)

Query: 308 IPNGSLAAITTGTFL-YLMFIITLAATVTREALLKNF 343
           IP  SL     G +L + M ++TL+  VT   L  NF
Sbjct: 289 IPPTSLTVPLLGKYLLFTMVLVTLSVVVTIAVLNVNF 325


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.324    0.139    0.434 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,212
Number of Sequences: 429
Number of extensions: 7412
Number of successful extensions: 22
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 22
Number of HSP's gapped (non-prelim): 2
length of query: 656
length of database: 140,377
effective HSP length: 62
effective length of query: 594
effective length of database: 113,779
effective search space: 67584726
effective search space used: 67584726
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 47 (23.0 bits)