GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003460-TA|BGIBMGA003460-PA|IPR007114|Major facilitator
superfamily, IPR005829|Sugar transporter superfamily,
IPR005828|General substrate transporter
         (109 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    21   4.4  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    20   7.7  

>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 20.6 bits (41), Expect = 4.4
 Identities = 11/36 (30%), Positives = 16/36 (44%)

Query: 12  LAALAGGVIGGPLVDYLGRRRTILLIAPPFCVGWIV 47
           L+ LA G + G L      +RT  + A   C  W +
Sbjct: 156 LSTLAPGKVLGELAILYNCKRTATITAATDCQLWAI 191


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic
          acetylcholine receptor beta1subunit protein.
          Length = 520

 Score = 19.8 bits (39), Expect = 7.7
 Identities = 8/11 (72%), Positives = 9/11 (81%)

Query: 34 ILLIAPPFCVG 44
          ILLI+  FCVG
Sbjct: 11 ILLISAVFCVG 21


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.328    0.149    0.473 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,093
Number of Sequences: 429
Number of extensions: 1288
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 109
length of database: 140,377
effective HSP length: 50
effective length of query: 59
effective length of database: 118,927
effective search space:  7016693
effective search space used:  7016693
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (21.2 bits)
S2: 39 (19.8 bits)