GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003459-TA|BGIBMGA003459-PA|undefined
         (58 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    20   2.7  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        18   8.3  
DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.              18   8.3  

>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 19.8 bits (39), Expect = 2.7
 Identities = 5/15 (33%), Positives = 12/15 (80%)

Query: 19  SDKMFTLKKWNAVAM 33
           SD+   ++KW+++A+
Sbjct: 113 SDRDLNIRKWSSIAI 127


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 18.2 bits (35), Expect = 8.3
 Identities = 8/18 (44%), Positives = 11/18 (61%)

Query: 10  DRGDNDGPKSDKMFTLKK 27
           DR D D  ++D   TL+K
Sbjct: 304 DRRDTDLSRADLEATLRK 321


>DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.
          Length = 145

 Score = 18.2 bits (35), Expect = 8.3
 Identities = 5/10 (50%), Positives = 8/10 (80%)

Query: 5   DCDGMDRGDN 14
           +C G+ +GDN
Sbjct: 114 ECKGIAKGDN 123


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.132    0.453 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,943
Number of Sequences: 429
Number of extensions: 528
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 58
length of database: 140,377
effective HSP length: 38
effective length of query: 20
effective length of database: 124,075
effective search space:  2481500
effective search space used:  2481500
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (19.1 bits)
S2: 35 (18.2 bits)