GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003457-TA|BGIBMGA003457-PA|IPR005225|Small GTP-binding
protein domain, IPR001806|Ras GTPase, IPR013753|Ras, IPR003577|Ras
small GTPase, Ras type
         (180 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.              23   2.3  
DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.              23   2.3  
EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.    21   5.3  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    21   5.3  

>DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.
          Length = 135

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 8/31 (25%), Positives = 17/31 (54%)

Query: 143 VEASAKSRTNVNEMFAEIVREMNVSPEKEKP 173
           V+   K+ + +++   + + E+N   E EKP
Sbjct: 29  VQEICKTESGIDQQTVDDINEVNFDVEDEKP 59


>DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.
          Length = 135

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 8/31 (25%), Positives = 17/31 (54%)

Query: 143 VEASAKSRTNVNEMFAEIVREMNVSPEKEKP 173
           V+   K+ + +++   + + E+N   E EKP
Sbjct: 29  VQEICKAESGIDQQTVDDINEVNFDVEDEKP 59


>EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase
          protein.
          Length = 200

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 8/23 (34%), Positives = 13/23 (56%)

Query: 28 FMEKYDPTIEDFYRKEIEVDNSP 50
          F + +DP IED++    + D  P
Sbjct: 61 FADLFDPIIEDYHGGFKKTDKHP 83


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase
          protein.
          Length = 355

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 8/23 (34%), Positives = 13/23 (56%)

Query: 28 FMEKYDPTIEDFYRKEIEVDNSP 50
          F + +DP IED++    + D  P
Sbjct: 77 FADLFDPIIEDYHGGFKKTDKHP 99


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.134    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 43,689
Number of Sequences: 429
Number of extensions: 1473
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 180
length of database: 140,377
effective HSP length: 54
effective length of query: 126
effective length of database: 117,211
effective search space: 14768586
effective search space used: 14768586
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 41 (20.6 bits)