GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003453-TA|BGIBMGA003453-PA|undefined
         (83 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   2.7  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    20   4.7  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    19   8.3  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 20.6 bits (41), Expect = 2.7
 Identities = 8/26 (30%), Positives = 11/26 (42%)

Query: 33  CTTGETLGSGADKGCCYQCPEYFAYQ 58
           C  G+     A + CC+ C     YQ
Sbjct: 591 CEVGQAKKYVAGEQCCWHCFNCTQYQ 616


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein
          protein.
          Length = 471

 Score = 19.8 bits (39), Expect = 4.7
 Identities = 5/15 (33%), Positives = 10/15 (66%)

Query: 55 FAYQHMTFYDLHLYL 69
          F Y H+ + D+H+ +
Sbjct: 48 FTYLHLLYQDVHVMI 62


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 19.0 bits (37), Expect = 8.3
 Identities = 7/23 (30%), Positives = 11/23 (47%)

Query: 60  MTFYDLHLYLRPCRKPSAKTGRK 82
           +T +DL      C+K   K  R+
Sbjct: 384 ITMFDLDFLTNACKKKDDKPKRR 406


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.327    0.145    0.513 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,077
Number of Sequences: 429
Number of extensions: 1161
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 83
length of database: 140,377
effective HSP length: 47
effective length of query: 36
effective length of database: 120,214
effective search space:  4327704
effective search space used:  4327704
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (20.3 bits)
S2: 37 (19.0 bits)