GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003452-TA|BGIBMGA003452-PA|undefined
         (347 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    24   2.2  
U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor prot...    23   5.2  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    22   6.8  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       22   9.0  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 19/66 (28%), Positives = 26/66 (39%)

Query: 268 NGPCKADCFETSPNNQAGHNQLRDDGEITTDSKSSKIDRPPLHSLTMKLLNPTGCSSGED 327
           N P    C +         +   + G I   S+SSK    P   L+  + N  GCSS  D
Sbjct: 874 NQPTMNKCSDRKRPASQATSVKAEPGSIMAMSESSKKVLSPGELLSSCVSNDGGCSSLVD 933

Query: 328 GATGSN 333
            +T  N
Sbjct: 934 VSTPVN 939


>U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor
           protein.
          Length = 95

 Score = 22.6 bits (46), Expect = 5.2
 Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 1/45 (2%)

Query: 224 LKSFEKKELISKGTTGHARELKEREGPCTRPGCIHRKPPPPCLWN 268
           L SF K ++       +   L +  G C + GCI RK     LW+
Sbjct: 48  LLSF-KGQVNDSACAANCLSLGKAGGHCEKVGCICRKTSFKDLWD 91


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 22.2 bits (45), Expect = 6.8
 Identities = 11/39 (28%), Positives = 19/39 (48%)

Query: 37  SADGNSGAEEGGSKKKDENENQLKRTKSRELRGGIMYYS 75
           +A+ ++ +EE   +K   +    KR KS     G  YY+
Sbjct: 753 NANSSTSSEESREEKATTSLEAEKREKSEHCEKGKEYYA 791


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.8 bits (44), Expect = 9.0
 Identities = 10/38 (26%), Positives = 16/38 (42%)

Query: 25  NRVHRPVRRKKKSADGNSGAEEGGSKKKDENENQLKRT 62
           NR       K K  D N+  E+     +D   ++ K+T
Sbjct: 97  NRGRTGFNNKNKDGDDNNDYEDNDYGNQDNRNDRRKKT 134


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.314    0.131    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,431
Number of Sequences: 429
Number of extensions: 5325
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 4
length of query: 347
length of database: 140,377
effective HSP length: 58
effective length of query: 289
effective length of database: 115,495
effective search space: 33378055
effective search space used: 33378055
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 44 (21.8 bits)