GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003450-TA|BGIBMGA003450-PA|IPR001304|C-type lectin
         (157 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    25   0.47 
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   4.4  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   7.6  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   7.6  

>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 24.6 bits (51), Expect = 0.47
 Identities = 20/86 (23%), Positives = 40/86 (46%), Gaps = 3/86 (3%)

Query: 2   LSAQKFRMDYMWAQM-FKTY-YRLNDLATNWDQARQICEAEGTYLFIPDSL-DEMESFKL 58
           ++ + F MD     + F ++ Y   D+   W+ ARQ+  AE   L   D + +   ++  
Sbjct: 132 MNLENFPMDTQRCPLQFGSFGYTKRDVIYKWNSARQVAIAEDMKLSQFDLVANPTANYSA 191

Query: 59  LMSNMKAQYTGIFMGLHDKFSDGNFV 84
             +   A+Y+ + +  H +   GNF+
Sbjct: 192 STTLSHAEYSMLLVYFHLQRHMGNFL 217


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.4 bits (43), Expect = 4.4
 Identities = 10/29 (34%), Positives = 16/29 (55%)

Query: 23  LNDLATNWDQARQICEAEGTYLFIPDSLD 51
           L+ L  + D  R+I +  GT    PD++D
Sbjct: 892 LDKLIRSPDTLRKIAQNRGTNPLAPDAVD 920


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 20.6 bits (41), Expect = 7.6
 Identities = 7/12 (58%), Positives = 10/12 (83%)

Query: 95  TIELLWAQGSPD 106
           T EL+WA+G+ D
Sbjct: 432 TEELIWARGTKD 443


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 20.6 bits (41), Expect = 7.6
 Identities = 7/12 (58%), Positives = 10/12 (83%)

Query: 95  TIELLWAQGSPD 106
           T EL+WA+G+ D
Sbjct: 522 TEELIWARGTKD 533


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.322    0.138    0.431 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 44,678
Number of Sequences: 429
Number of extensions: 1801
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 157
length of database: 140,377
effective HSP length: 53
effective length of query: 104
effective length of database: 117,640
effective search space: 12234560
effective search space used: 12234560
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 41 (20.6 bits)