GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003446-TA|BGIBMGA003446-PA|IPR002035|von Willebrand
factor, type A
         (987 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family p...    26   1.3  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          24   7.0  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   9.2  

>AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family
           protein protein.
          Length = 166

 Score = 26.2 bits (55), Expect = 1.3
 Identities = 10/28 (35%), Positives = 17/28 (60%)

Query: 796 DAYSSPCKAPRSPSPPNETRLDSQELQI 823
           + Y++  + PR  S PN +RLD  E+ +
Sbjct: 83  EEYAANSQPPRITSVPNTSRLDKSEISL 110


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 23.8 bits (49), Expect = 7.0
 Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 1/46 (2%)

Query: 333 HPVVKFTCSSQEPMVIDNLPFDKYELEPSPLTQFILARKQPTICWQ 378
           HP  K   ++ EP   D+  +D+Y+ E S    +    K+  I WQ
Sbjct: 156 HPRYKRPRTTFEPRATDSRHYDRYKEEESN-ENYNWEHKETHIDWQ 200


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.4 bits (48), Expect = 9.2
 Identities = 22/93 (23%), Positives = 36/93 (38%), Gaps = 1/93 (1%)

Query: 575 YRNPFDIQRRDLLDQVVRMRANFLQPSLAHTRLLDEDSAHSMPVAQ-MGNYQEYLKRMTP 633
           YR P  ++R    D+ +    N  Q    H +L    S H    AQ     Q+  ++  P
Sbjct: 782 YRIPEVMRRLMSEDKRLSKSVNGDQSQPPHQQLHHHQSTHPQAQAQAQPQQQQQQQQQQP 841

Query: 634 QLREIESQPVRQHMFGNPFKIDKRMMVDEADID 666
           Q ++ + Q  +Q   G     D    ++E   D
Sbjct: 842 QQQQQQQQQQQQQQRGPMTNDDFNPNIEEEASD 874


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 257,699
Number of Sequences: 429
Number of extensions: 10538
Number of successful extensions: 18
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 17
Number of HSP's gapped (non-prelim): 3
length of query: 987
length of database: 140,377
effective HSP length: 64
effective length of query: 923
effective length of database: 112,921
effective search space: 104226083
effective search space used: 104226083
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 48 (23.4 bits)