GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003443-TA|BGIBMGA003443-PA|IPR001357|BRCT
         (1140 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             27   0.87 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   4.6  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 27.1 bits (57), Expect = 0.87
 Identities = 40/199 (20%), Positives = 70/199 (35%), Gaps = 14/199 (7%)

Query: 796 GGDSQDTPKQQPSDAAGDVERNTSTPDSAFGAALRPGSGRLSP-------DARKRLWRVV 848
           GG ++D  K   +DA+      T+   +   AA   G+G  +P       +A   +    
Sbjct: 199 GGAARDESKAGSTDASTPATVTTTGATTTLPAASATGTGPATPSAVVATSNATAAMTTGT 258

Query: 849 NELPSRQPEPPRDKTTPLSEIRNRFLSRYQEGXXXXXXXXXXXXXXRKLQLDE-ADTPPA 907
             +P+R+    R      ++ R+      +E               ++L+LDE AD   +
Sbjct: 259 TTIPTRRLRKRRQNDGEGADDRDDDEENEEE-----EDGRGQSEAEKRLKLDEDADGAVS 313

Query: 908 KMMKLSQECNAETNSRAAEDAQRPGSLVEEQLQRLQAALSERLSTQRARRMTRDPSPAHP 967
            + +     + E  +  A D        EE            L  ++   +   PS    
Sbjct: 314 PLRREKDRGSREYPTSNATDTDGTKERTEEVALDRTPVTQGLLRVKKEEELQEAPSCGGG 373

Query: 968 PLVMVND-LTEDGIACPCR 985
           P ++    L  DGI  PCR
Sbjct: 374 PTILTTPGLDSDGIRLPCR 392


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.6 bits (51), Expect = 4.6
 Identities = 10/39 (25%), Positives = 21/39 (53%)

Query: 248 VLKYKITAASTSSPLAEHRLPDMSLNFSRITNVRPPSNF 286
           V++YKI+  S  + +    +P    N + + N+RP + +
Sbjct: 910 VIEYKISKGSWETDIDRVLVPGSQQNVAGVFNLRPATTY 948


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.315    0.131    0.387 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 296,738
Number of Sequences: 429
Number of extensions: 11141
Number of successful extensions: 25
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 22
Number of HSP's gapped (non-prelim): 3
length of query: 1140
length of database: 140,377
effective HSP length: 65
effective length of query: 1075
effective length of database: 112,492
effective search space: 120928900
effective search space used: 120928900
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 49 (23.8 bits)