GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003442-TA|BGIBMGA003442-PA|IPR002453|Beta tubulin,
IPR000217|Tubulin, IPR000158|Cell division protein FtsZ,
IPR013838|Beta tubulin, autoregulation binding site,
IPR003008|Tubulin/FtsZ, GTPase, IPR008280|Tubulin/FtsZ, C-terminal
         (439 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    24   2.2  
DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein ...    23   5.1  
AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein ...    23   5.1  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   8.9  

>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 24.2 bits (50), Expect = 2.2
 Identities = 7/20 (35%), Positives = 14/20 (70%)

Query: 113 VDSVLDVVRKEAEGCDCLQG 132
           +DS+++++R   + CD L G
Sbjct: 106 IDSIINIIRVRVDACDRLWG 125


>DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein 2
           protein.
          Length = 117

 Score = 23.0 bits (47), Expect = 5.1
 Identities = 14/59 (23%), Positives = 22/59 (37%)

Query: 310 YLTVAAVFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFI 368
           Y   A    G+     V ++ LN+   +  Y    +   +  A CD   R LK  A  +
Sbjct: 17  YTVTAETEEGQSGRSRVSDEQLNMALSDQRYLRRQLKCALGEAPCDPVGRRLKSLAPLV 75


>AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein
           protein.
          Length = 117

 Score = 23.0 bits (47), Expect = 5.1
 Identities = 14/59 (23%), Positives = 22/59 (37%)

Query: 310 YLTVAAVFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFI 368
           Y   A    G+     V ++ LN+   +  Y    +   +  A CD   R LK  A  +
Sbjct: 17  YTVTAETEEGQSGRSRVSDEQLNMALSDQRYLRRQLKCALGEAPCDPVGRRLKSLAPLV 75


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 8.9
 Identities = 12/41 (29%), Positives = 21/41 (51%)

Query: 155 IREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVEN 195
           +R      I + F ++ +PKVS+       ATLS  +++ N
Sbjct: 538 VRTPTDSYIRSFFELLQNPKVSNEQFLNTAATLSFCEMIHN 578


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.135    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,871
Number of Sequences: 429
Number of extensions: 4945
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 4
length of query: 439
length of database: 140,377
effective HSP length: 60
effective length of query: 379
effective length of database: 114,637
effective search space: 43447423
effective search space used: 43447423
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 45 (22.2 bits)