GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003439-TA|BGIBMGA003439-PA|IPR005834|Haloacid
dehalogenase-like hydrolase, IPR006402|HAD-superfamily hydrolase,
subfamily IA, variant 3
         (182 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   3.1  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    22   4.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   5.4  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   5.4  
U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.              21   7.1  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 15/60 (25%), Positives = 23/60 (38%)

Query: 120 KPEPSKCLVFEDSPHGVTAGIKAGMQVVMVPDPHTDKRLTKHATVVLPTLAKFQPEWFGL 179
           +PE +K    E  PH  +   + G+  V      T    T   T +L  +    P+  GL
Sbjct: 145 QPETTKVDTREVQPHDASEKEQLGLASVKAEPGSTGTTTTSTGTRLLHGILSQHPQQHGL 204


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 8/20 (40%), Positives = 15/20 (75%)

Query: 5   GGTEQRLSEILCKELNLPVT 24
           GG  + +S I+ K+L++PV+
Sbjct: 128 GGGIELISHIISKQLHIPVS 147


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 7/18 (38%), Positives = 12/18 (66%)

Query: 117  FPDKPEPSKCLVFEDSPH 134
            F ++ +PSK + F+  PH
Sbjct: 1733 FREEMDPSKAMQFQTFPH 1750


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 9/19 (47%), Positives = 12/19 (63%)

Query: 26  TEFRDQLLVLGDKMLAGTP 44
           TE  DQ+L L D  ++G P
Sbjct: 88  TEISDQMLELRDLPISGKP 106


>U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.
          Length = 182

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 10/26 (38%), Positives = 14/26 (53%)

Query: 133 PHGVTAGIKAGMQVVMVPDPHTDKRL 158
           P  +T  IK G+Q  ++P   T K L
Sbjct: 4   PGALTKKIKVGLQAHVIPAELTAKLL 29


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.136    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 52,578
Number of Sequences: 429
Number of extensions: 2073
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 182
length of database: 140,377
effective HSP length: 54
effective length of query: 128
effective length of database: 117,211
effective search space: 15003008
effective search space used: 15003008
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 41 (20.6 bits)