GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003436-TA|BGIBMGA003436-PA|IPR012890|GC-rich sequence
DNA-binding factor-like
         (422 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ485319-1|ABF21078.1|  175|Apis mellifera icarapin variant 2 pr...    23   6.5  
DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1 pr...    23   6.5  
AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-ri...    23   6.5  
AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.    23   6.5  

>DQ485319-1|ABF21078.1|  175|Apis mellifera icarapin variant 2
           precursor protein.
          Length = 175

 Score = 22.6 bits (46), Expect = 6.5
 Identities = 8/23 (34%), Positives = 15/23 (65%)

Query: 144 TVVTESSVRDDIDLMLVPTIVGR 166
           T++T  S   D D+  +PT++G+
Sbjct: 122 TILTTVSSEADSDVTTLPTLIGK 144


>DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1
           precursor protein.
          Length = 223

 Score = 22.6 bits (46), Expect = 6.5
 Identities = 8/23 (34%), Positives = 15/23 (65%)

Query: 144 TVVTESSVRDDIDLMLVPTIVGR 166
           T++T  S   D D+  +PT++G+
Sbjct: 170 TILTTVSSEADSDVTTLPTLIGK 192


>AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-rich
           protein precursor protein.
          Length = 223

 Score = 22.6 bits (46), Expect = 6.5
 Identities = 8/23 (34%), Positives = 15/23 (65%)

Query: 144 TVVTESSVRDDIDLMLVPTIVGR 166
           T++T  S   D D+  +PT++G+
Sbjct: 170 TILTTVSSEADSDVTTLPTLIGK 192


>AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.
          Length = 223

 Score = 22.6 bits (46), Expect = 6.5
 Identities = 8/23 (34%), Positives = 15/23 (65%)

Query: 144 TVVTESSVRDDIDLMLVPTIVGR 166
           T++T  S   D D+  +PT++G+
Sbjct: 170 TILTTVSSEADSDVTTLPTLIGK 192


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.328    0.140    0.440 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 68,125
Number of Sequences: 429
Number of extensions: 1760
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 4
length of query: 422
length of database: 140,377
effective HSP length: 59
effective length of query: 363
effective length of database: 115,066
effective search space: 41768958
effective search space used: 41768958
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 45 (22.2 bits)