GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003435-TA|BGIBMGA003435-PA|undefined
         (407 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          24   2.0  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    24   2.0  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          24   2.7  

>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 24.2 bits (50), Expect = 2.0
 Identities = 12/27 (44%), Positives = 15/27 (55%)

Query: 177 DAALIHAARKTRQQARELGGDYVPLKP 203
           D A  H +  TRQ+  ELG D +P  P
Sbjct: 123 DNARPHTSLVTRQKLLELGWDVLPHPP 149


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 24.2 bits (50), Expect = 2.0
 Identities = 12/27 (44%), Positives = 15/27 (55%)

Query: 177 DAALIHAARKTRQQARELGGDYVPLKP 203
           D A  H +  TRQ+  ELG D +P  P
Sbjct: 245 DNARPHTSLVTRQKLLELGWDVLPHPP 271


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 23.8 bits (49), Expect = 2.7
 Identities = 8/19 (42%), Positives = 12/19 (63%)

Query: 89  DGDNNRYDNNGHEDTNDNG 107
           + +NN  +NN +   NDNG
Sbjct: 240 NNNNNNNNNNNNNGANDNG 258


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.315    0.134    0.379 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,048
Number of Sequences: 429
Number of extensions: 3049
Number of successful extensions: 16
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 13
Number of HSP's gapped (non-prelim): 3
length of query: 407
length of database: 140,377
effective HSP length: 59
effective length of query: 348
effective length of database: 115,066
effective search space: 40042968
effective search space used: 40042968
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 45 (22.2 bits)