GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003432-TA|BGIBMGA003432-PA|IPR003124|Actin-binding WH2
         (117 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   0.30 
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   4.9  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    20   8.5  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.6 bits (51), Expect = 0.30
 Identities = 10/28 (35%), Positives = 15/28 (53%)

Query: 31   PVAKAPPVEDNRSNLLSEIRQGVELRSV 58
            P  K PPV  +  N    I++G  +RS+
Sbjct: 1649 PNRKLPPVPGSNYNTCDRIKRGTVIRSI 1676


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 20.6 bits (41), Expect = 4.9
 Identities = 10/28 (35%), Positives = 16/28 (57%)

Query: 29  VEPVAKAPPVEDNRSNLLSEIRQGVELR 56
           V+P   +PPV+ +RS+  S    G  +R
Sbjct: 271 VQPGHGSPPVKQHRSSSASTTCSGHTVR 298


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 19.8 bits (39), Expect = 8.5
 Identities = 10/28 (35%), Positives = 16/28 (57%)

Query: 27  KRVEPVAKAPPVEDNRSNLLSEIRQGVE 54
           +RV  V     VE+N  + L ++ QG+E
Sbjct: 113 RRVGIVENQYAVENNTGSSLCDLVQGLE 140


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.310    0.127    0.359 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,349
Number of Sequences: 429
Number of extensions: 213
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 117
length of database: 140,377
effective HSP length: 51
effective length of query: 66
effective length of database: 118,498
effective search space:  7820868
effective search space used:  7820868
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.4 bits)
S2: 39 (19.8 bits)