GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003430-TA|BGIBMGA003430-PA|undefined
         (78 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    23   0.58 
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    22   1.0  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       19   5.4  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    19   7.1  

>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 22.6 bits (46), Expect = 0.58
 Identities = 10/37 (27%), Positives = 19/37 (51%)

Query: 12  EFLETGRTGRRNAMPDILHPQGAEVTTADLPSRLQQL 48
           EF+     GR+  M ++++  G    T  LP+ L ++
Sbjct: 349 EFVCVNYVGRKRPMHNVVYRPGENPVTQRLPAVLSRI 385


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 21.8 bits (44), Expect = 1.0
 Identities = 9/25 (36%), Positives = 14/25 (56%)

Query: 54  EEIALIMSAQNSENNFLKLPNVSRL 78
           EE+  ++ A+N EN F     V R+
Sbjct: 305 EEVNYMLKAKNMENRFPLFTTVHRI 329


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 19.4 bits (38), Expect = 5.4
 Identities = 15/62 (24%), Positives = 23/62 (37%), Gaps = 4/62 (6%)

Query: 16  TGRTGRRNAMPDILHPQGAEVTTADLPSRLQQLVTTDVEEIALIMSAQNSENNFLKLPNV 75
           TGR G R        P+       DL   L+Q      + +   M   N+  NF+    +
Sbjct: 542 TGRVGNRGRATSFFDPEEDAPLRGDLVRILKQA----NQSVPDWMMGGNANRNFMPGRGI 597

Query: 76  SR 77
           S+
Sbjct: 598 SK 599


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 19.0 bits (37), Expect = 7.1
 Identities = 8/20 (40%), Positives = 12/20 (60%)

Query: 53  VEEIALIMSAQNSENNFLKL 72
           +E   L  S Q ++NN +KL
Sbjct: 509 LETKELFSSQQKTKNNLMKL 528


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.313    0.129    0.350 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,965
Number of Sequences: 429
Number of extensions: 666
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 78
length of database: 140,377
effective HSP length: 47
effective length of query: 31
effective length of database: 120,214
effective search space:  3726634
effective search space used:  3726634
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.2 bits)
S2: 36 (18.6 bits)