GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003422-TA|BGIBMGA003422-PA|undefined
         (74 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    19   4.9  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    19   4.9  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    19   8.5  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    19   8.5  

>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 19.4 bits (38), Expect = 4.9
 Identities = 6/19 (31%), Positives = 11/19 (57%)

Query: 42  YNYVKNDGDNRRYKGTYVV 60
           YNY  N+ + + Y   Y++
Sbjct: 104 YNYNNNNYNKKLYYKNYII 122


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 19.4 bits (38), Expect = 4.9
 Identities = 5/13 (38%), Positives = 10/13 (76%)

Query: 59  VVMRPDDPRVKLI 71
           +++ P DPR+K +
Sbjct: 158 LIIHPGDPRIKSV 170


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 18.6 bits (36), Expect = 8.5
 Identities = 5/9 (55%), Positives = 8/9 (88%)

Query: 12  LIQQGWNEI 20
           L++ GWNE+
Sbjct: 266 LLRAGWNEL 274


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 18.6 bits (36), Expect = 8.5
 Identities = 5/9 (55%), Positives = 8/9 (88%)

Query: 12  LIQQGWNEI 20
           L++ GWNE+
Sbjct: 266 LLRAGWNEL 274


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.134    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,055
Number of Sequences: 429
Number of extensions: 534
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 74
length of database: 140,377
effective HSP length: 46
effective length of query: 28
effective length of database: 120,643
effective search space:  3378004
effective search space used:  3378004
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)
S2: 36 (18.6 bits)