GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003410-TA|BGIBMGA003410-PA|undefined
         (113 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   1.2  
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    21   3.5  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   3.5  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    20   8.2  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     20   8.2  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    20   8.2  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    20   8.2  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.6 bits (46), Expect = 1.2
 Identities = 10/31 (32%), Positives = 16/31 (51%)

Query: 28  DNKVFQHDESDPNHNDSFASNGAQQNQLNGD 58
           +N    ++ ++   ND+   NGA  N  NGD
Sbjct: 241 NNNNNNNNNNNNGANDNGNGNGASNNNNNGD 271


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 21.0 bits (42), Expect = 3.5
 Identities = 8/19 (42%), Positives = 13/19 (68%)

Query: 75  KNGNAKKKDVEIDMNGTNP 93
           ++GN KKK+ E + +G  P
Sbjct: 208 EHGNKKKKNKEDEDDGATP 226


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 3.5
 Identities = 8/25 (32%), Positives = 15/25 (60%)

Query: 34   HDESDPNHNDSFASNGAQQNQLNGD 58
            HD+++ + NDS  SN   + + + D
Sbjct: 1867 HDQNNSSFNDSKESNEISEAECDRD 1891


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 19.8 bits (39), Expect = 8.2
 Identities = 8/28 (28%), Positives = 15/28 (53%)

Query: 80  KKKDVEIDMNGTNPYDEYFVPVNEHRKF 107
           K++   ID+N      + F+  ++ RKF
Sbjct: 175 KRQPTSIDLNAVRLCFQVFLEGSQKRKF 202


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 19.8 bits (39), Expect = 8.2
 Identities = 8/28 (28%), Positives = 15/28 (53%)

Query: 80  KKKDVEIDMNGTNPYDEYFVPVNEHRKF 107
           K++   ID+N      + F+  ++ RKF
Sbjct: 175 KRQPTSIDLNAVRLCFQVFLEGSQKRKF 202


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 19.8 bits (39), Expect = 8.2
 Identities = 8/25 (32%), Positives = 15/25 (60%)

Query: 26   GYDNKVFQHDESDPNHNDSFASNGA 50
            G++ K+   D    + +DS +SNG+
Sbjct: 1055 GFETKLVLEDGITSSGSDSGSSNGS 1079


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 19.8 bits (39), Expect = 8.2
 Identities = 6/7 (85%), Positives = 7/7 (100%)

Query: 93  PYDEYFV 99
           PYDEY+V
Sbjct: 141 PYDEYYV 147


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.312    0.131    0.391 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,540
Number of Sequences: 429
Number of extensions: 924
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of query: 113
length of database: 140,377
effective HSP length: 50
effective length of query: 63
effective length of database: 118,927
effective search space:  7492401
effective search space used:  7492401
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.5 bits)
S2: 39 (19.8 bits)