GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003409-TA|BGIBMGA003409-PA|IPR007114|Major facilitator
superfamily, IPR001958|Tetracycline resistance protein,
IPR011701|Major facilitator superfamily MFS_1
         (438 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       24   2.2  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    24   2.9  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     24   2.9  
DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.              23   5.1  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                22   8.9  

>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 24.2 bits (50), Expect = 2.2
 Identities = 10/25 (40%), Positives = 14/25 (56%)

Query: 34 EGHVPFITLSFVIRIVEAMGNAAFL 58
          EGH+  I    V+ I+ A+GN   L
Sbjct: 35 EGHIVSIVFYSVLMIISAIGNTTVL 59


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.8 bits (49), Expect = 2.9
 Identities = 9/22 (40%), Positives = 14/22 (63%), Gaps = 1/22 (4%)

Query: 5   YKSEPYEFYIQNAQW-TFATKW 25
           ++S+PY F IQN  +    T+W
Sbjct: 370 FRSKPYRFGIQNGDYVVLETEW 391


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein
          protein.
          Length = 238

 Score = 23.8 bits (49), Expect = 2.9
 Identities = 9/22 (40%), Positives = 14/22 (63%), Gaps = 1/22 (4%)

Query: 5  YKSEPYEFYIQNAQW-TFATKW 25
          ++S+PY F IQN  +    T+W
Sbjct: 76 FRSKPYRFGIQNGDYVVLETEW 97


>DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.
          Length = 150

 Score = 23.0 bits (47), Expect = 5.1
 Identities = 8/8 (100%), Positives = 8/8 (100%)

Query: 129 YHDDEDLK 136
           YHDDEDLK
Sbjct: 100 YHDDEDLK 107


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 22.2 bits (45), Expect = 8.9
 Identities = 7/18 (38%), Positives = 13/18 (72%)

Query: 421 YRPTYGSLDNRYRGTYGT 438
           +RP   ++D+ ++GTY T
Sbjct: 270 HRPIDDNIDDEFKGTYKT 287


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.326    0.141    0.446 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,501
Number of Sequences: 429
Number of extensions: 5066
Number of successful extensions: 15
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 12
Number of HSP's gapped (non-prelim): 5
length of query: 438
length of database: 140,377
effective HSP length: 60
effective length of query: 378
effective length of database: 114,637
effective search space: 43332786
effective search space used: 43332786
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 45 (22.2 bits)