GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003408-TA|BGIBMGA003408-PA|IPR013053|Hormone binding,
IPR004272|Odorant binding protein
         (257 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    71   1e-14
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    25   0.90 
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    25   0.90 
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    25   0.90 
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   8.4  

>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 70.9 bits (166), Expect = 1e-14
 Identities = 35/118 (29%), Positives = 68/118 (57%), Gaps = 3/118 (2%)

Query: 9   ICPRE--EKALGKCLKDALNEYIPKLATGLPEYGVPPSEPLIVPSISIQQSTGPITVTSS 66
           IC R   +K   +C+ +A+ + +  LA GL  + + P EPL V S+ I +S G +T+   
Sbjct: 30  ICDRSLPQKEYNQCIAEAVRDAVVSLAGGLKSFKILPIEPLAVDSVKIGESQGSVTLRQE 89

Query: 67  YSDVTVRGPSK-MRIKDVQVNSVHRRVVAKLYIPELKMKGNYKLSGQLLMLPMNGEGQ 123
           Y ++ + G +K + IK+  ++     + ++ Y P++    +YK+ G++L+LP+ G G+
Sbjct: 90  YKNIKLYGLTKNLEIKNYNIDWDKCILSSESYNPQVDFVADYKIEGKVLLLPVRGAGK 147



 Score = 46.0 bits (104), Expect = 3e-07
 Identities = 24/69 (34%), Positives = 36/69 (52%)

Query: 186 VNFHVGYASMQLENLFGGDGELSKAMNKFLNENWKKLSEELQVPMEEALRDFLKPLADHA 245
           V F+     ++ ENLF G+ EL + MN+F+NEN + L +ELQ   EE        + +  
Sbjct: 181 VKFNPAKVKLRFENLFDGNKELGEQMNRFINENSELLFKELQAAYEETFSLVFTKIDNEI 240

Query: 246 FATLNADDI 254
           F  +  D I
Sbjct: 241 FNRVPFDKI 249


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 24.6 bits (51), Expect = 0.90
 Identities = 8/23 (34%), Positives = 13/23 (56%)

Query: 9   ICPREEKALGKCLKDALNEYIPK 31
           +CP+EE      + D L  Y+P+
Sbjct: 265 LCPQEEACFRLLMNDILRPYVPE 287


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 24.6 bits (51), Expect = 0.90
 Identities = 8/23 (34%), Positives = 13/23 (56%)

Query: 9   ICPREEKALGKCLKDALNEYIPK 31
           +CP+EE      + D L  Y+P+
Sbjct: 180 LCPQEEACFRLLMNDILRPYVPE 202


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 24.6 bits (51), Expect = 0.90
 Identities = 8/23 (34%), Positives = 13/23 (56%)

Query: 9   ICPREEKALGKCLKDALNEYIPK 31
           +CP+EE      + D L  Y+P+
Sbjct: 499 LCPQEEACFRLLMNDILRPYVPE 521


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 9/25 (36%), Positives = 13/25 (52%)

Query: 164 TIILGREPRPNSVDALTCDQLDVNF 188
           TI   R+P  +S D   CD + + F
Sbjct: 309 TITHLRDPDHHSTDIQNCDSVKIKF 333


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.135    0.396 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,364
Number of Sequences: 429
Number of extensions: 3462
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 6
length of query: 257
length of database: 140,377
effective HSP length: 56
effective length of query: 201
effective length of database: 116,353
effective search space: 23386953
effective search space used: 23386953
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 43 (21.4 bits)