GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003407-TA|BGIBMGA003407-PA|IPR013053|Hormone binding
         (123 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    38   3e-05

>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 37.9 bits (84), Expect = 3e-05
 Identities = 31/123 (25%), Positives = 49/123 (39%), Gaps = 5/123 (4%)

Query: 4   DYMVIGEFQMLPVESIGKMAANF----SECTIALEALGARVHTRMVIRDARVRLRCAGPV 59
           DY + G+  +LPV   GK         S   I  E       T + I+   V+   A  V
Sbjct: 130 DYKIEGKVLLLPVRGAGKSNITMYDLKSHNDIYCEKYEKNGETYLRIKKHAVKFNPA-KV 188

Query: 60  GANLMEAHSTTDEMEMVTDHIVSMHSEDLVREVQPAIETALAMVLEDIANKFLKHVPAEM 119
                       E+    +  ++ +SE L +E+Q A E   ++V   I N+    VP + 
Sbjct: 189 KLRFENLFDGNKELGEQMNRFINENSELLFKELQAAYEETFSLVFTKIDNEIFNRVPFDK 248

Query: 120 VFP 122
           +FP
Sbjct: 249 IFP 251


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.322    0.133    0.376 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,829
Number of Sequences: 429
Number of extensions: 763
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1
length of query: 123
length of database: 140,377
effective HSP length: 51
effective length of query: 72
effective length of database: 118,498
effective search space:  8531856
effective search space used:  8531856
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (21.0 bits)
S2: 39 (19.8 bits)