GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003405-TA|BGIBMGA003405-PA|IPR013053|Hormone binding,
IPR004272|Odorant binding protein
         (210 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    85   6e-19
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    21   8.6  

>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 84.6 bits (200), Expect = 6e-19
 Identities = 52/199 (26%), Positives = 89/199 (44%), Gaps = 1/199 (0%)

Query: 13  MSSSNGIPELDVPGIEPLSLGQIALARGPQGAKLTAVVNDVKVNG-PSNFVIEELKSDLD 71
           +S + G+    +  IEPL++  + +        L     ++K+ G   N  I+    D D
Sbjct: 53  VSLAGGLKSFKILPIEPLAVDSVKIGESQGSVTLRQEYKNIKLYGLTKNLEIKNYNIDWD 112

Query: 72  NNRXXXXXXXXXXXXNGKYKMDIQVLLLRLQGRGNITGTFRDYACNVTMRGHKEKRGDEE 131
                             YK++ +VLLL ++G G    T  D   +  +   K ++  E 
Sbjct: 113 KCILSSESYNPQVDFVADYKIEGKVLLLPVRGAGKSNITMYDLKSHNDIYCEKYEKNGET 172

Query: 132 YLRFDPFKVKLRVGQSSIYLTNLFDGDPVLGPATNRVINENSNVFLEEIRPVLERSLGEL 191
           YLR     VK    +  +   NLFDG+  LG   NR INENS +  +E++   E +   +
Sbjct: 173 YLRIKKHAVKFNPAKVKLRFENLFDGNKELGEQMNRFINENSELLFKELQAAYEETFSLV 232

Query: 192 FTEMANKITAKFTYKELFP 210
           FT++ N+I  +  + ++FP
Sbjct: 233 FTKIDNEIFNRVPFDKIFP 251


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 12/33 (36%), Positives = 18/33 (54%)

Query: 176 FLEEIRPVLERSLGELFTEMANKITAKFTYKEL 208
           F  +IR V +   GELF  M  +I A++  + L
Sbjct: 218 FEGDIRIVNKDRRGELFYYMHQQIMARYNCERL 250


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.139    0.395 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 54,787
Number of Sequences: 429
Number of extensions: 2210
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 210
length of database: 140,377
effective HSP length: 55
effective length of query: 155
effective length of database: 116,782
effective search space: 18101210
effective search space used: 18101210
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 42 (21.0 bits)