GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003404-TA|BGIBMGA003404-PA|IPR013053|Hormone binding,
IPR004272|Odorant binding protein
         (289 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    72   5e-15
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    22   5.5  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    22   5.5  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   7.3  

>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 72.1 bits (169), Expect = 5e-15
 Identities = 35/145 (24%), Positives = 73/145 (50%)

Query: 143 HGVDLDSLILKAKVNFPKLHFDGLYKLDTQILVVPIKGEGNLLADVVNCDAELVFKGGKY 202
           + +D D  IL ++   P++ F   YK++ ++L++P++G G     + +  +       KY
Sbjct: 107 YNIDWDKCILSSESYNPQVDFVADYKIEGKVLLLPVRGAGKSNITMYDLKSHNDIYCEKY 166

Query: 203 QKDGLEFIKFNSLDTKIGIKDYNVKFDGLFNNDKVLGDAANDAINQNKGEFFNTFKPFLE 262
           +K+G  +++      K       ++F+ LF+ +K LG+  N  IN+N    F   +   E
Sbjct: 167 EKNGETYLRIKKHAVKFNPAKVKLRFENLFDGNKELGEQMNRFINENSELLFKELQAAYE 226

Query: 263 AAVSKLLLNISNKVVDDLPFNELLP 287
              S +   I N++ + +PF+++ P
Sbjct: 227 ETFSLVFTKIDNEIFNRVPFDKIFP 251


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 2/40 (5%)

Query: 245 AINQNKGEFFNTFKPFLEAAVSKLL--LNISNKVVDDLPF 282
           A  ++K  FFN FK F     S      N++ ++++D  F
Sbjct: 451 AEKKDKNSFFNMFKKFASLKKSPYFKEANLNTRMLNDNVF 490


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 2/40 (5%)

Query: 245 AINQNKGEFFNTFKPFLEAAVSKLL--LNISNKVVDDLPF 282
           A  ++K  FFN FK F     S      N++ ++++D  F
Sbjct: 451 AEKKDKNSFFNMFKKFASLKKSPYFKEANLNTRMLNDNVF 490


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 12/60 (20%), Positives = 25/60 (41%), Gaps = 6/60 (10%)

Query: 81  TIKC--SADAEPHVRHC----RYTKPTISWQRKLRTCVGVTNAVLTRSHMSNIAETQNQP 134
           T++C      + H   C    +  KP +S      + +  T + + R+H+++     N P
Sbjct: 296 TVRCFTGGPRKSHESQCPMLQKLEKPVLSSSTTTTSPMTSTKSTIVRNHLNSTCSVTNSP 355


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.136    0.396 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,542
Number of Sequences: 429
Number of extensions: 3115
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 4
length of query: 289
length of database: 140,377
effective HSP length: 57
effective length of query: 232
effective length of database: 115,924
effective search space: 26894368
effective search space used: 26894368
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 43 (21.4 bits)