GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003403-TA|BGIBMGA003403-PA|IPR003316|Transcription
factor E2F/dimerisation partner (TDP)
         (456 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    25   1.3  

>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 25.0 bits (52), Expect = 1.3
 Identities = 40/166 (24%), Positives = 67/166 (40%), Gaps = 24/166 (14%)

Query: 44  DHGYGATPKHQIRREAPTAPPKTSEAVKRRLNLSESSSGSQGHVVPMKADFKTPKQKRVK 103
           +HGY +T          T  PKT ++   R   +E     + H+            +++K
Sbjct: 21  EHGYASTMPMPDDMRTVTKRPKTKKSQGSRTTHNELEKNRRAHL--------RNCLEKLK 72

Query: 104 VLTPYSRPSSSMKKYTERSRFDTSLGLLT--KKFVALL--KSSQNGVLDLNIAAEHLSVQ 159
           VL P            E SR  T+LGLLT  K+F+  L  +  ++ V    ++ E   + 
Sbjct: 73  VLVPLG---------PETSR-HTTLGLLTKAKRFIKSLEERERKHAVHKEQLSREQRFL- 121

Query: 160 KRRIYDITNVLEGIGILEKRSKNNIQWKYGMSGGSCGADGSTARRL 205
           +RR+  +TN     G+      + +      +G SCG   + A  L
Sbjct: 122 RRRLEQLTNQTGLHGLHGLHGLHGLS-SSAPTGSSCGPGAAAAAAL 166


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.314    0.131    0.376 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,014
Number of Sequences: 429
Number of extensions: 3473
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 1
length of query: 456
length of database: 140,377
effective HSP length: 60
effective length of query: 396
effective length of database: 114,637
effective search space: 45396252
effective search space used: 45396252
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 45 (22.2 bits)