GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003402-TA|BGIBMGA003402-PA|IPR002804|Protein of unknown
function DUF101
         (159 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   3.4  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   4.5  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   7.8  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 8/18 (44%), Positives = 12/18 (66%)

Query: 1   MDEELGGISEEYYDIPPV 18
           M++ +GG  E  YDI P+
Sbjct: 170 MEDSVGGKCEVLYDIAPL 187


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength
          rhodopsin protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 11/31 (35%), Positives = 16/31 (51%)

Query: 40 EAFEQCGMAMFGYMTELEYVQIKDVHTIEAS 70
          EAF   G A F   T ++ V    +H I+A+
Sbjct: 10 EAFSYGGQARFNNQTVVDKVPPDMLHLIDAN 40


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 20.6 bits (41), Expect = 7.8
 Identities = 7/18 (38%), Positives = 12/18 (66%)

Query: 90  SYEPFLICKKLVITEFNT 107
           +++P L  KKL +  FN+
Sbjct: 111 AFQPLLELKKLTVQTFNS 128


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.139    0.418 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 41,519
Number of Sequences: 429
Number of extensions: 1473
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 159
length of database: 140,377
effective HSP length: 53
effective length of query: 106
effective length of database: 117,640
effective search space: 12469840
effective search space used: 12469840
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 41 (20.6 bits)