GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003399-TA|BGIBMGA003399-PA|undefined
         (568 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    26   0.96 
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    24   2.9  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 25.8 bits (54), Expect = 0.96
 Identities = 32/96 (33%), Positives = 39/96 (40%), Gaps = 13/96 (13%)

Query: 78   NNIHQQGPAIQLKNSQTNQQQYINQAIASSVSTLAMNPSVIGSHP-AHLTTNMVHTQLAP 136
            +N  QQ    QLK   TNQQQ I        S +    + IG  P A       H Q   
Sbjct: 1055 SNQSQQIQQQQLKRVVTNQQQSI------QTSGMQRIIAQIGGKPIAVQIQQSPHQQQQQ 1108

Query: 137  MQNHTLGSSLTIQNSAMMIPALQSIQNPAQLGQQGL 172
             Q   L   LT  NS  +I    S++N   L Q+GL
Sbjct: 1109 QQQKILAKVLTSSNSGQLI----SVEN--LLAQKGL 1138


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 24.2 bits (50), Expect = 2.9
 Identities = 10/40 (25%), Positives = 16/40 (40%)

Query: 102 QAIASSVSTLAMNPSVIGSHPAHLTTNMVHTQLAPMQNHT 141
           + + +  +TL   PS       H +    H+QL P    T
Sbjct: 349 ETLNTKCNTLERTPSKCSQTSVHYSNGQTHSQLCPTPRST 388


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.314    0.129    0.385 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,929
Number of Sequences: 429
Number of extensions: 4702
Number of successful extensions: 5
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 3
length of query: 568
length of database: 140,377
effective HSP length: 61
effective length of query: 507
effective length of database: 114,208
effective search space: 57903456
effective search space used: 57903456
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 46 (22.6 bits)