GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003396-TA|BGIBMGA003396-PA|IPR006172|DNA-directed DNA
polymerase B, IPR006133|DNA polymerase B, exonuclease, IPR006134|DNA
polymerase B region, IPR004578|DNA polymerase (pol2),
IPR012337|Polynucleotidyl transferase, Ribonuclease H fold
         (1379 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    26   1.8  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    25   3.2  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    25   3.2  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   9.9  

>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase protein.
          Length = 693

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 2/34 (5%)

Query: 1334 LSCEDPA--CGHRTARLPQTFAGGYPLCRQCEKG 1365
            + C+D +  CG R  + P   A GYP  RQ   G
Sbjct: 619  IGCKDASSYCGLRDRKYPDARAMGYPFDRQPRAG 652



 Score = 24.6 bits (51), Expect = 5.6
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 6/37 (16%)

Query: 1112 DLIGNKMPLSVLAITKQLTKNPNEYADKHTQSHVQVA 1148
            D++GN M  S+L+       N N Y D H   HV ++
Sbjct: 343  DVLGNIMEASILS------PNQNVYGDLHNFGHVAIS 373


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 25.4 bits (53), Expect = 3.2
 Identities = 16/63 (25%), Positives = 31/63 (49%)

Query: 627 PDLVVGHDLQGFQQDLLIGNVLDLNIPNWSRLGRLKRSVAPQRKFAAKDAFLGRLVCDVK 686
           PDL   ++ +G   ++++ NV     PN S L  ++ S+        K   L R VC ++
Sbjct: 118 PDLFFSNEKEGHFHNIIMPNVYIRIFPNGSVLYSIRISLTLSCPMNLKLYPLDRQVCSLR 177

Query: 687 ISA 689
           +++
Sbjct: 178 MAS 180


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 25.4 bits (53), Expect = 3.2
 Identities = 16/63 (25%), Positives = 31/63 (49%)

Query: 627 PDLVVGHDLQGFQQDLLIGNVLDLNIPNWSRLGRLKRSVAPQRKFAAKDAFLGRLVCDVK 686
           PDL   ++ +G   ++++ NV     PN S L  ++ S+        K   L R VC ++
Sbjct: 118 PDLFFSNEKEGHFHNIIMPNVYIRIFPNGSVLYSIRISLTLSCPMNLKLYPLDRQVCSLR 177

Query: 687 ISA 689
           +++
Sbjct: 178 MAS 180


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.8 bits (49), Expect = 9.9
 Identities = 7/16 (43%), Positives = 11/16 (68%)

Query: 1204 HQLHPVISRICEPIEG 1219
            H+L+P  S  C+P+ G
Sbjct: 69   HRLYPAFSSSCDPVPG 84


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.134    0.390 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 390,017
Number of Sequences: 429
Number of extensions: 17779
Number of successful extensions: 34
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 29
Number of HSP's gapped (non-prelim): 5
length of query: 1379
length of database: 140,377
effective HSP length: 66
effective length of query: 1313
effective length of database: 112,063
effective search space: 147138719
effective search space used: 147138719
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 49 (23.8 bits)