GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003394-TA|BGIBMGA003394-PA|IPR004327|Phosphotyrosyl
phosphatase activator, PTPA
         (290 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    29   0.036
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   4.2  

>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 29.5 bits (63), Expect = 0.036
 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 3/57 (5%)

Query: 201 PAKFLDDEIVDKYANEYMFLSCIKYIKEVKKGPFAEHSNQ-LWSISAVGSWMKINQG 256
           P K  + EIV K  +   F+S IK IK++    +   +N+ +W +S    + KI  G
Sbjct: 332 PLKRRNIEIVAKNNDTLQFISGIKIIKQISSNIYERQNNEYIWIVS--NKYQKIANG 386


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 10/24 (41%), Positives = 13/24 (54%)

Query: 21  NESIKGKPLTVDCKVSDNVKKIIN 44
           NES +  P TVD  +  N+   IN
Sbjct: 556 NESEEQCPYTVDAAIYGNISHFIN 579


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.323    0.139    0.427 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,105
Number of Sequences: 429
Number of extensions: 3957
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 2
length of query: 290
length of database: 140,377
effective HSP length: 57
effective length of query: 233
effective length of database: 115,924
effective search space: 27010292
effective search space used: 27010292
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 43 (21.4 bits)