GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003392-TA|BGIBMGA003392-PA|IPR002909|Cell surface
receptor IPT/TIG
         (764 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    24   4.0  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              24   5.3  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   9.3  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    23   9.3  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 24.2 bits (50), Expect = 4.0
 Identities = 18/80 (22%), Positives = 39/80 (48%), Gaps = 7/80 (8%)

Query: 215 LVLLKNMYEEDQRKNGKEPLQSLETAIEDSIKLADSLFSEILSRKENADKTREALSLLTR 274
           L +L+ M E  +    ++   ++++ I+  +KL    + ++      A K R    LLT 
Sbjct: 714 LSMLQRMAEFTKLDTNRQVNSAVKSTIQSLMKLKSPEWKDL------AKKARSVNHLLTH 767

Query: 275 HKFLFQLPSS-IDQNIRKKE 293
           H++ ++L    ID+ I + +
Sbjct: 768 HEYDYELSRGYIDEKILENQ 787



 Score = 23.0 bits (47), Expect = 9.3
 Identities = 10/33 (30%), Positives = 20/33 (60%)

Query: 194  KEGQLSFLKANTGAVMDQLDRLVLLKNMYEEDQ 226
            K+ +LS    +T  ++D  D  +L+ N++ ED+
Sbjct: 1409 KDVKLSDFGFSTEDILDTADEDLLINNVFYEDE 1441


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.8 bits (49), Expect = 5.3
 Identities = 13/32 (40%), Positives = 15/32 (46%)

Query: 122 TYTPPDPLGLSTEGEDCKFPEEELHEMFPDGS 153
           T TPP PL     G D +   E    +F DGS
Sbjct: 335 TGTPPPPLVWRRNGADLETLNEPEIRVFNDGS 366


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 23.0 bits (47), Expect = 9.3
 Identities = 11/38 (28%), Positives = 21/38 (55%)

Query: 282 PSSIDQNIRKKEYDLVVNDYNRVKNLFGNTDVKLFQKI 319
           P +   +  K+ YD ++++YNR+    GN   +L  K+
Sbjct: 13  PGASANSEAKRLYDDLLSNYNRLIRPVGNNSDRLTVKM 50


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 23.0 bits (47), Expect = 9.3
 Identities = 9/36 (25%), Positives = 18/36 (50%)

Query: 357 SLKWEEDAAWVAITARKEYLMSLLNKVKDHFKQKEE 392
           S ++  ++    +T   E   SLL+  + HF+Q  +
Sbjct: 698 SREYRSNSMGAVMTRNSEMFSSLLSDTEQHFRQHRD 733


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.134    0.394 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,345
Number of Sequences: 429
Number of extensions: 8022
Number of successful extensions: 14
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 5
length of query: 764
length of database: 140,377
effective HSP length: 63
effective length of query: 701
effective length of database: 113,350
effective search space: 79458350
effective search space used: 79458350
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 47 (23.0 bits)