GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003391-TA|BGIBMGA003391-PA|IPR001623|Heat shock protein
DnaJ, N-terminal
         (119 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         22   2.2  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    22   2.2  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    22   2.2  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    21   5.0  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    21   5.0  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    21   5.0  

>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 2.2
 Identities = 9/16 (56%), Positives = 12/16 (75%)

Query: 29  ASMKFAEAVKNLPKFD 44
           ASMK  EA+ ++P FD
Sbjct: 355 ASMKIKEALPHVPIFD 370


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 2.2
 Identities = 9/16 (56%), Positives = 12/16 (75%)

Query: 29  ASMKFAEAVKNLPKFD 44
           ASMK  EA+ ++P FD
Sbjct: 355 ASMKIKEALPHVPIFD 370


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 2.2
 Identities = 9/16 (56%), Positives = 12/16 (75%)

Query: 29  ASMKFAEAVKNLPKFD 44
           ASMK  EA+ ++P FD
Sbjct: 355 ASMKIKEALPHVPIFD 370


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 20.6 bits (41), Expect = 5.0
 Identities = 13/42 (30%), Positives = 18/42 (42%)

Query: 42  KFDSETLANSKYYKGGFEPKMTKREAALILGVSPTASKAKIR 83
           K    T   S+  K    PK+ K     ++ V PTA  A+ R
Sbjct: 348 KVGVRTYLESELAKAKERPKLRKDMYEKMVQVDPTAPNAEER 389


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 20.6 bits (41), Expect = 5.0
 Identities = 13/42 (30%), Positives = 18/42 (42%)

Query: 42  KFDSETLANSKYYKGGFEPKMTKREAALILGVSPTASKAKIR 83
           K    T   S+  K    PK+ K     ++ V PTA  A+ R
Sbjct: 263 KVGVRTYLESELAKAKERPKLRKDMYEKMVQVDPTAPNAEER 304


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 20.6 bits (41), Expect = 5.0
 Identities = 13/42 (30%), Positives = 18/42 (42%)

Query: 42  KFDSETLANSKYYKGGFEPKMTKREAALILGVSPTASKAKIR 83
           K    T   S+  K    PK+ K     ++ V PTA  A+ R
Sbjct: 582 KVGVRTYLESELAKAKERPKLRKDMYEKMVQVDPTAPNAEER 623


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.314    0.130    0.356 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,053
Number of Sequences: 429
Number of extensions: 863
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 119
length of database: 140,377
effective HSP length: 51
effective length of query: 68
effective length of database: 118,498
effective search space:  8057864
effective search space used:  8057864
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.6 bits)
S2: 39 (19.8 bits)