GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003387-TA|BGIBMGA003387-PA|IPR001304|C-type lectin,
IPR001993|Mitochondrial substrate carrier
         (383 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    27   0.35 
AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    26   0.62 
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    26   0.62 
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    23   4.4  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   5.8  

>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 26.6 bits (56), Expect = 0.35
 Identities = 10/27 (37%), Positives = 14/27 (51%)

Query: 89  PKYHKEFTNTAHATKHIAKHYGIKEFY 115
           P+ HK FT   H   H+  H G K ++
Sbjct: 13  PECHKRFTRDHHLKTHMRLHTGEKPYH 39


>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 25.8 bits (54), Expect = 0.62
 Identities = 33/146 (22%), Positives = 52/146 (35%), Gaps = 5/146 (3%)

Query: 52  LDYKVNPYVAKSVAGIVAGCFEATLMPFERIQTLLIHPKY--HKEFTNTAHATKHIAKHY 109
           L Y V    +   AG  + CF   L  F R +      K    +EFT   +    I K  
Sbjct: 112 LRYFVGNLASGGAAGATSLCFVYPL-DFARTRLAADVGKAGGEREFTGLGNCLTKIFKAD 170

Query: 110 GIKEFYRGLVPILLRNGPSNAMFFIIRDEVKERLPQQDKILYKSLQDFLAGASIGALLST 169
           GI   YRG    +       A +F   D  +  LP   K  +  L  +     +  +   
Sbjct: 171 GITGLYRGFGVSVQGIIIYRAAYFGFYDTARGMLPDPKKTPF--LISWGIAQVVTTVAGI 228

Query: 170 LFYPLNVIKIAMQCELGGPHRTLSYE 195
           + YP + ++  M  + G     + Y+
Sbjct: 229 VSYPFDTVRRRMMMQSGRAKSEILYK 254



 Score = 25.0 bits (52), Expect = 1.1
 Identities = 10/30 (33%), Positives = 17/30 (56%)

Query: 155 QDFLAGASIGALLSTLFYPLNVIKIAMQCE 184
           +DFLAG    A+  T   P+  +K+ +Q +
Sbjct: 12  KDFLAGGVAAAISKTTVAPIERVKLLLQVQ 41


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 25.8 bits (54), Expect = 0.62
 Identities = 33/146 (22%), Positives = 52/146 (35%), Gaps = 5/146 (3%)

Query: 52  LDYKVNPYVAKSVAGIVAGCFEATLMPFERIQTLLIHPKY--HKEFTNTAHATKHIAKHY 109
           L Y V    +   AG  + CF   L  F R +      K    +EFT   +    I K  
Sbjct: 112 LRYFVGNLASGGAAGATSLCFVYPL-DFARTRLAADVGKAGGEREFTGLGNCLTKIFKAD 170

Query: 110 GIKEFYRGLVPILLRNGPSNAMFFIIRDEVKERLPQQDKILYKSLQDFLAGASIGALLST 169
           GI   YRG    +       A +F   D  +  LP   K  +  L  +     +  +   
Sbjct: 171 GITGLYRGFGVSVQGIIIYRAAYFGFYDTARGMLPDPKKTPF--LISWGIAQVVTTVAGI 228

Query: 170 LFYPLNVIKIAMQCELGGPHRTLSYE 195
           + YP + ++  M  + G     + Y+
Sbjct: 229 VSYPFDTVRRRMMMQSGRAKSEILYK 254



 Score = 25.0 bits (52), Expect = 1.1
 Identities = 10/30 (33%), Positives = 17/30 (56%)

Query: 155 QDFLAGASIGALLSTLFYPLNVIKIAMQCE 184
           +DFLAG    A+  T   P+  +K+ +Q +
Sbjct: 12  KDFLAGGVAAAISKTTVAPIERVKLLLQVQ 41


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 23.0 bits (47), Expect = 4.4
 Identities = 10/21 (47%), Positives = 12/21 (57%)

Query: 77  MPFERIQTLLIHPKYHKEFTN 97
           MP E I+ L  HP+Y  E  N
Sbjct: 335 MPMELIENLRNHPEYIDETRN 355


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.6 bits (46), Expect = 5.8
 Identities = 11/47 (23%), Positives = 21/47 (44%)

Query: 336 VPAMFFCEKPLNATVSKQALRQRVKKAKPALQSQAQMISADGLFEDI 382
           +P+M    +P++   +  +  +   K  P+L S     S  GLF  +
Sbjct: 648 MPSMPLLPRPISCHTTPDSFIEAPNKTLPSLPSTLTKNSKQGLFSKL 694


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.324    0.139    0.428 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,442
Number of Sequences: 429
Number of extensions: 4960
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 7
length of query: 383
length of database: 140,377
effective HSP length: 59
effective length of query: 324
effective length of database: 115,066
effective search space: 37281384
effective search space used: 37281384
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 45 (22.2 bits)