GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003377-TA|BGIBMGA003377-PA|IPR003959|AAA ATPase, core,
IPR003593|AAA+ ATPase, core, IPR013748|Replication factor C,
IPR008921|DNA polymerase III clamp loader subunit, C-terminal
         (351 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              23   3.0  

>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 2/42 (4%)

Query: 58  CLSGGDLPHLLFYGPPGTGK--TSAILAAAKQLFGDISRDRV 97
           C + GD+ H + Y P GT    T A + A K L   + + RV
Sbjct: 78  CGACGDIAHTVKYCPKGTKNPGTLATVNAFKLLRNSMGKRRV 119


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.135    0.390 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,531
Number of Sequences: 429
Number of extensions: 3557
Number of successful extensions: 27
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 27
Number of HSP's gapped (non-prelim): 1
length of query: 351
length of database: 140,377
effective HSP length: 58
effective length of query: 293
effective length of database: 115,495
effective search space: 33840035
effective search space used: 33840035
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 44 (21.8 bits)