GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003376-TA|BGIBMGA003376-PA|IPR010569|Myotubularin-
related
         (557 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     31   0.033
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    30   0.044
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    24   3.8  

>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 30.7 bits (66), Expect = 0.033
 Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 1/78 (1%)

Query: 16  ILKYPRQDNIDGTVCITGHHLILSSRKEGVQELWLLHKNIDSIEKKENKPSSGITQGGSL 75
           ILK P   +I    C T H  + +  +E ++E  ++ + I ++  +  +  S IT+   +
Sbjct: 117 ILKGPANPDIFRVSCATEHSQLTNISEEVLKEAKIIQEEIRTLLDESIQRKSDITE-LDV 175

Query: 76  FLKCKDLRIFQLDIASST 93
             +CKDL  F  ++   T
Sbjct: 176 SKRCKDLASFMENLLQET 193


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 30.3 bits (65), Expect = 0.044
 Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 1/78 (1%)

Query: 16  ILKYPRQDNIDGTVCITGHHLILSSRKEGVQELWLLHKNIDSIEKKENKPSSGITQGGSL 75
           ILK P   +I    C T H  + +  +E ++E  ++ + I ++  +  +  S IT+   +
Sbjct: 411 ILKGPANPDIFRVSCATEHSQLTNISEEVLKEAKIIQEEIRTLLDESIQRKSDITE-LDV 469

Query: 76  FLKCKDLRIFQLDIASST 93
             +CKDL  F  ++   T
Sbjct: 470 SKRCKDLASFMGNLLQET 487


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 23.8 bits (49), Expect = 3.8
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)

Query: 207 GQPLYGPKHRRCRPDEAILNAVVAIGTKGVIYDLRSTN 244
           G P+Y   ++RC  D   +N VV  GTK      R+ N
Sbjct: 468 GTPIY-ECNKRCNCDIDCINRVVQRGTKMQFCIFRTAN 504


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.134    0.411 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,157
Number of Sequences: 429
Number of extensions: 7810
Number of successful extensions: 74
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 72
Number of HSP's gapped (non-prelim): 3
length of query: 557
length of database: 140,377
effective HSP length: 61
effective length of query: 496
effective length of database: 114,208
effective search space: 56647168
effective search space used: 56647168
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 46 (22.6 bits)