Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA003375-TA|BGIBMGA003375-PA|IPR002156|Ribonuclease H,
IPR012337|Polynucleotidyl transferase, Ribonuclease H fold,
IPR009027|Ribosomal protein L9 N-terminal-like
(322 letters)
Database: human
224,733 sequences; 73,234,838 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CR541820-1|CAG46619.1| 286|Homo sapiens RNASEH1 protein. 164 3e-40
BT019670-1|AAV38476.1| 286|Homo sapiens ribonuclease H1 protein. 164 3e-40
BC002973-1|AAH02973.1| 286|Homo sapiens ribonuclease H1 protein. 164 3e-40
AF048995-1|AAC78564.1| 286|Homo sapiens ribonuclease H1 protein. 164 3e-40
AF048994-1|AAC78563.1| 286|Homo sapiens ribonuclease H1 protein. 164 3e-40
AF039652-1|AAC09261.1| 286|Homo sapiens ribonuclease H type II ... 164 3e-40
AC108488-1|AAX82026.1| 286|Homo sapiens unknown protein. 164 3e-40
AJ224117-1|CAA11835.1| 286|Homo sapiens RNase HII protein. 164 4e-40
BC021682-1|AAH21682.1| 294|Homo sapiens glycine-N-acyltransfera... 31 4.1
BC016789-1|AAH16789.1| 294|Homo sapiens GLYATL2 protein protein. 31 4.1
AF426250-1|AAO73139.1| 294|Homo sapiens BXMAS2-10 protein. 31 4.1
AY034072-1|AAK56405.1| 2713|Homo sapiens chromodomain helicase D... 30 9.5
>CR541820-1|CAG46619.1| 286|Homo sapiens RNASEH1 protein.
Length = 286
Score = 164 bits (399), Expect = 3e-40
Identities = 75/143 (52%), Positives = 94/143 (65%)
Query: 175 FVQVYTDGACSANGRSSAKAGLGVYWGDGHSLNVSEPVSGRATNNCGEIQAATKAIRQAL 234
FV VYTDG CS+NGR +AG+GVYWG GH LNV + GR TN EI AA KAI QA
Sbjct: 139 FVVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQAK 198
Query: 235 QNGITKLSINTDSKFLINSVTKWMPGWKRKGWKLQSGEPVKNEKDFKDLDSVQHKLDIKW 294
I KL + TDS F IN +T W+ GWK+ GWK +G+ V N++DF L+ + +DI+W
Sbjct: 199 TQNINKLVLYTDSMFTINGITNWVQGWKKNGWKTSAGKEVINKEDFVALERLTQGMDIQW 258
Query: 295 NYVEAHRGIHGNEMADQLAKAGA 317
+V H G GNE AD+LA+ GA
Sbjct: 259 MHVPGHSGFIGNEEADRLAREGA 281
Score = 55.6 bits (128), Expect = 2e-07
Identities = 23/44 (52%), Positives = 32/44 (72%)
Query: 3 FYAVAKGRTSGIFMTWADCEAQVKGFSGAKYKKFDTINQAQDYV 46
FYAV KGR +G+F+TW +C AQV F A++KKF T ++A +V
Sbjct: 28 FYAVRKGRKTGVFLTWNECRAQVDRFPAARFKKFATEDEAWAFV 71
>BT019670-1|AAV38476.1| 286|Homo sapiens ribonuclease H1 protein.
Length = 286
Score = 164 bits (399), Expect = 3e-40
Identities = 75/143 (52%), Positives = 94/143 (65%)
Query: 175 FVQVYTDGACSANGRSSAKAGLGVYWGDGHSLNVSEPVSGRATNNCGEIQAATKAIRQAL 234
FV VYTDG CS+NGR +AG+GVYWG GH LNV + GR TN EI AA KAI QA
Sbjct: 139 FVVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQAK 198
Query: 235 QNGITKLSINTDSKFLINSVTKWMPGWKRKGWKLQSGEPVKNEKDFKDLDSVQHKLDIKW 294
I KL + TDS F IN +T W+ GWK+ GWK +G+ V N++DF L+ + +DI+W
Sbjct: 199 TQNINKLVLYTDSMFTINGITNWVQGWKKNGWKTSAGKEVINKEDFVALERLTQGMDIQW 258
Query: 295 NYVEAHRGIHGNEMADQLAKAGA 317
+V H G GNE AD+LA+ GA
Sbjct: 259 MHVPGHSGFIGNEEADRLAREGA 281
Score = 55.6 bits (128), Expect = 2e-07
Identities = 22/44 (50%), Positives = 33/44 (75%)
Query: 3 FYAVAKGRTSGIFMTWADCEAQVKGFSGAKYKKFDTINQAQDYV 46
FYAV +GR +G+F+TW +C AQV F A++KKF T ++A+ +V
Sbjct: 28 FYAVRRGRKTGVFLTWNECRAQVDRFPAARFKKFATEDEARAFV 71
>BC002973-1|AAH02973.1| 286|Homo sapiens ribonuclease H1 protein.
Length = 286
Score = 164 bits (399), Expect = 3e-40
Identities = 75/143 (52%), Positives = 94/143 (65%)
Query: 175 FVQVYTDGACSANGRSSAKAGLGVYWGDGHSLNVSEPVSGRATNNCGEIQAATKAIRQAL 234
FV VYTDG CS+NGR +AG+GVYWG GH LNV + GR TN EI AA KAI QA
Sbjct: 139 FVVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQAK 198
Query: 235 QNGITKLSINTDSKFLINSVTKWMPGWKRKGWKLQSGEPVKNEKDFKDLDSVQHKLDIKW 294
I KL + TDS F IN +T W+ GWK+ GWK +G+ V N++DF L+ + +DI+W
Sbjct: 199 TQNINKLVLYTDSMFTINGITNWVQGWKKNGWKTSAGKEVINKEDFVALERLTQGMDIQW 258
Query: 295 NYVEAHRGIHGNEMADQLAKAGA 317
+V H G GNE AD+LA+ GA
Sbjct: 259 MHVPGHSGFIGNEEADRLAREGA 281
Score = 54.4 bits (125), Expect = 5e-07
Identities = 22/44 (50%), Positives = 32/44 (72%)
Query: 3 FYAVAKGRTSGIFMTWADCEAQVKGFSGAKYKKFDTINQAQDYV 46
FYAV +GR +G+F+TW +C AQV F A++KKF T ++A +V
Sbjct: 28 FYAVRRGRKTGVFLTWNECRAQVDRFPAARFKKFATEDEAWAFV 71
>AF048995-1|AAC78564.1| 286|Homo sapiens ribonuclease H1 protein.
Length = 286
Score = 164 bits (399), Expect = 3e-40
Identities = 75/143 (52%), Positives = 94/143 (65%)
Query: 175 FVQVYTDGACSANGRSSAKAGLGVYWGDGHSLNVSEPVSGRATNNCGEIQAATKAIRQAL 234
FV VYTDG CS+NGR +AG+GVYWG GH LNV + GR TN EI AA KAI QA
Sbjct: 139 FVVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQAK 198
Query: 235 QNGITKLSINTDSKFLINSVTKWMPGWKRKGWKLQSGEPVKNEKDFKDLDSVQHKLDIKW 294
I KL + TDS F IN +T W+ GWK+ GWK +G+ V N++DF L+ + +DI+W
Sbjct: 199 TQNINKLVLYTDSMFTINGITNWVQGWKKNGWKTSAGKEVINKEDFVALERLTQGMDIQW 258
Query: 295 NYVEAHRGIHGNEMADQLAKAGA 317
+V H G GNE AD+LA+ GA
Sbjct: 259 MHVPGHSGFIGNEEADRLAREGA 281
Score = 54.4 bits (125), Expect = 5e-07
Identities = 22/44 (50%), Positives = 32/44 (72%)
Query: 3 FYAVAKGRTSGIFMTWADCEAQVKGFSGAKYKKFDTINQAQDYV 46
FYAV +GR +G+F+TW +C AQV F A++KKF T ++A +V
Sbjct: 28 FYAVRRGRKTGVFLTWNECRAQVDRFPAARFKKFATEDEAWAFV 71
>AF048994-1|AAC78563.1| 286|Homo sapiens ribonuclease H1 protein.
Length = 286
Score = 164 bits (399), Expect = 3e-40
Identities = 75/143 (52%), Positives = 94/143 (65%)
Query: 175 FVQVYTDGACSANGRSSAKAGLGVYWGDGHSLNVSEPVSGRATNNCGEIQAATKAIRQAL 234
FV VYTDG CS+NGR +AG+GVYWG GH LNV + GR TN EI AA KAI QA
Sbjct: 139 FVVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQAK 198
Query: 235 QNGITKLSINTDSKFLINSVTKWMPGWKRKGWKLQSGEPVKNEKDFKDLDSVQHKLDIKW 294
I KL + TDS F IN +T W+ GWK+ GWK +G+ V N++DF L+ + +DI+W
Sbjct: 199 TQNINKLVLYTDSMFTINGITNWVQGWKKNGWKTSAGKEVINKEDFVALERLTQGMDIQW 258
Query: 295 NYVEAHRGIHGNEMADQLAKAGA 317
+V H G GNE AD+LA+ GA
Sbjct: 259 MHVPGHSGFIGNEEADRLAREGA 281
Score = 54.4 bits (125), Expect = 5e-07
Identities = 22/44 (50%), Positives = 32/44 (72%)
Query: 3 FYAVAKGRTSGIFMTWADCEAQVKGFSGAKYKKFDTINQAQDYV 46
FYAV +GR +G+F+TW +C AQV F A++KKF T ++A +V
Sbjct: 28 FYAVRRGRKTGVFLTWNECRAQVDRFPAARFKKFATEDEAWAFV 71
>AF039652-1|AAC09261.1| 286|Homo sapiens ribonuclease H type II
protein.
Length = 286
Score = 164 bits (399), Expect = 3e-40
Identities = 75/143 (52%), Positives = 94/143 (65%)
Query: 175 FVQVYTDGACSANGRSSAKAGLGVYWGDGHSLNVSEPVSGRATNNCGEIQAATKAIRQAL 234
FV VYTDG CS+NGR +AG+GVYWG GH LNV + GR TN EI AA KAI QA
Sbjct: 139 FVVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQAK 198
Query: 235 QNGITKLSINTDSKFLINSVTKWMPGWKRKGWKLQSGEPVKNEKDFKDLDSVQHKLDIKW 294
I KL + TDS F IN +T W+ GWK+ GWK +G+ V N++DF L+ + +DI+W
Sbjct: 199 TQNINKLVLYTDSMFTINGITNWVQGWKKNGWKTSAGKEVINKEDFVALERLTQGMDIQW 258
Query: 295 NYVEAHRGIHGNEMADQLAKAGA 317
+V H G GNE AD+LA+ GA
Sbjct: 259 MHVPGHSGFIGNEEADRLAREGA 281
Score = 54.4 bits (125), Expect = 5e-07
Identities = 22/44 (50%), Positives = 32/44 (72%)
Query: 3 FYAVAKGRTSGIFMTWADCEAQVKGFSGAKYKKFDTINQAQDYV 46
FYAV +GR +G+F+TW +C AQV F A++KKF T ++A +V
Sbjct: 28 FYAVRRGRKTGVFLTWNECRAQVDRFPAARFKKFATEDEAWAFV 71
>AC108488-1|AAX82026.1| 286|Homo sapiens unknown protein.
Length = 286
Score = 164 bits (399), Expect = 3e-40
Identities = 75/143 (52%), Positives = 94/143 (65%)
Query: 175 FVQVYTDGACSANGRSSAKAGLGVYWGDGHSLNVSEPVSGRATNNCGEIQAATKAIRQAL 234
FV VYTDG CS+NGR +AG+GVYWG GH LNV + GR TN EI AA KAI QA
Sbjct: 139 FVVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQAK 198
Query: 235 QNGITKLSINTDSKFLINSVTKWMPGWKRKGWKLQSGEPVKNEKDFKDLDSVQHKLDIKW 294
I KL + TDS F IN +T W+ GWK+ GWK +G+ V N++DF L+ + +DI+W
Sbjct: 199 TQNINKLVLYTDSMFTINGITNWVQGWKKNGWKTSAGKEVINKEDFVALERLTQGMDIQW 258
Query: 295 NYVEAHRGIHGNEMADQLAKAGA 317
+V H G GNE AD+LA+ GA
Sbjct: 259 MHVPGHSGFIGNEEADRLAREGA 281
Score = 54.4 bits (125), Expect = 5e-07
Identities = 22/44 (50%), Positives = 32/44 (72%)
Query: 3 FYAVAKGRTSGIFMTWADCEAQVKGFSGAKYKKFDTINQAQDYV 46
FYAV +GR +G+F+TW +C AQV F A++KKF T ++A +V
Sbjct: 28 FYAVRRGRKTGVFLTWNECRAQVDRFPAARFKKFATEDEAWAFV 71
>AJ224117-1|CAA11835.1| 286|Homo sapiens RNase HII protein.
Length = 286
Score = 164 bits (398), Expect = 4e-40
Identities = 75/143 (52%), Positives = 94/143 (65%)
Query: 175 FVQVYTDGACSANGRSSAKAGLGVYWGDGHSLNVSEPVSGRATNNCGEIQAATKAIRQAL 234
FV VYTDG CS+NGR +AG+GVYWG GH LNV + GR TN EI AA KAI QA
Sbjct: 139 FVVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQAK 198
Query: 235 QNGITKLSINTDSKFLINSVTKWMPGWKRKGWKLQSGEPVKNEKDFKDLDSVQHKLDIKW 294
I KL + TDS F IN +T W+ GWK+ GWK +G+ V N++DF L+ + +DI+W
Sbjct: 199 TQNINKLVLYTDSMFTINGITNWVRGWKKNGWKTSAGKEVINKEDFVALERLTQGMDIQW 258
Query: 295 NYVEAHRGIHGNEMADQLAKAGA 317
+V H G GNE AD+LA+ GA
Sbjct: 259 MHVPGHSGFIGNEEADRLAREGA 281
Score = 54.4 bits (125), Expect = 5e-07
Identities = 22/44 (50%), Positives = 32/44 (72%)
Query: 3 FYAVAKGRTSGIFMTWADCEAQVKGFSGAKYKKFDTINQAQDYV 46
FYAV +GR +G+F+TW +C AQV F A++KKF T ++A +V
Sbjct: 28 FYAVRRGRKTGVFLTWNECRAQVDRFPAARFKKFATEDEAWAFV 71
>BC021682-1|AAH21682.1| 294|Homo sapiens
glycine-N-acyltransferase-like 2 protein.
Length = 294
Score = 31.5 bits (68), Expect = 4.1
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Query: 114 NTILTKQMDDIEARLKGFQKGVDKIIKKNSAKPE-RKTIMIDPPEPKKQRQDNND----F 168
N I +Q I+ +G + + K+ S + + KTI+ P PKK + +ND F
Sbjct: 93 NVISWEQTLQIQGCQEGLDEAIRKVATSKSVQVDYMKTILFIPELPKKHKTSSNDKMELF 152
Query: 169 ETDPD 173
E D D
Sbjct: 153 EVDDD 157
>BC016789-1|AAH16789.1| 294|Homo sapiens GLYATL2 protein protein.
Length = 294
Score = 31.5 bits (68), Expect = 4.1
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Query: 114 NTILTKQMDDIEARLKGFQKGVDKIIKKNSAKPE-RKTIMIDPPEPKKQRQDNND----F 168
N I +Q I+ +G + + K+ S + + KTI+ P PKK + +ND F
Sbjct: 93 NVISWEQTLQIQGCQEGLDEAIRKVATSKSVQVDYMKTILFIPELPKKHKTSSNDKMELF 152
Query: 169 ETDPD 173
E D D
Sbjct: 153 EVDDD 157
>AF426250-1|AAO73139.1| 294|Homo sapiens BXMAS2-10 protein.
Length = 294
Score = 31.5 bits (68), Expect = 4.1
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Query: 114 NTILTKQMDDIEARLKGFQKGVDKIIKKNSAKPE-RKTIMIDPPEPKKQRQDNND----F 168
N I +Q I+ +G + + K+ S + + KTI+ P PKK + +ND F
Sbjct: 93 NVISWEQTLQIQGCQEGLDEAIRKVATSKSVQVDYMKTILFIPELPKKHKTSSNDKMELF 152
Query: 169 ETDPD 173
E D D
Sbjct: 153 EVDDD 157
>AY034072-1|AAK56405.1| 2713|Homo sapiens chromodomain helicase DNA
binding protein 5 protein.
Length = 2713
Score = 30.3 bits (65), Expect = 9.5
Identities = 15/36 (41%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Query: 137 KIIKKNS-AKPERKTIMIDPPEPKKQRQDNNDFETD 171
KI K ++ AK E+++++ID P +KQ + N FE D
Sbjct: 1026 KIAKLDTEAKNEKESLVIDRPRVRKQTKHYNSFEED 1061
Database: human
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 73,234,838
Number of sequences in database: 224,733
Lambda K H
0.312 0.129 0.383
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 44,562,487
Number of Sequences: 224733
Number of extensions: 1806250
Number of successful extensions: 4266
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 4249
Number of HSP's gapped (non-prelim): 21
length of query: 322
length of database: 73,234,838
effective HSP length: 90
effective length of query: 232
effective length of database: 53,008,868
effective search space: 12298057376
effective search space used: 12298057376
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 65 (30.3 bits)
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