GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003375-TA|BGIBMGA003375-PA|IPR002156|Ribonuclease H,
IPR012337|Polynucleotidyl transferase, Ribonuclease H fold,
IPR009027|Ribosomal protein L9 N-terminal-like
         (322 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    26   0.51 
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              24   1.5  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    23   3.6  
AJ308527-1|CAC33429.1|   57|Apis mellifera defensin protein.           22   8.2  

>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 25.8 bits (54), Expect = 0.51
 Identities = 11/26 (42%), Positives = 16/26 (61%)

Query: 170 TDPDGFVQVYTDGACSANGRSSAKAG 195
           T P+ FV++Y DG    + R + KAG
Sbjct: 104 TSPNKFVRLYQDGRVLYSSRLTIKAG 129


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 10/29 (34%), Positives = 17/29 (58%)

Query: 155 PPEPKKQRQDNNDFETDPDGFVQVYTDGA 183
           PP P   R++  D ET  +  ++V+ DG+
Sbjct: 338 PPPPLVWRRNGADLETLNEPEIRVFNDGS 366


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 11/28 (39%), Positives = 16/28 (57%)

Query: 127 RLKGFQKGVDKIIKKNSAKPERKTIMID 154
           RL G   GVD I+  N+   + + I+ID
Sbjct: 122 RLWGVDTGVDDILGNNTVIHQPRIIIID 149


>AJ308527-1|CAC33429.1|   57|Apis mellifera defensin protein.
          Length = 57

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 9/15 (60%), Positives = 10/15 (66%)

Query: 181 DGACSANGRSSAKAG 195
           D AC+AN  S  KAG
Sbjct: 32  DSACAANCHSLGKAG 46


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.312    0.129    0.383 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,441
Number of Sequences: 429
Number of extensions: 3395
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 4
length of query: 322
length of database: 140,377
effective HSP length: 58
effective length of query: 264
effective length of database: 115,495
effective search space: 30490680
effective search space used: 30490680
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 44 (21.8 bits)