GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA003374-TA|BGIBMGA003374-PA|IPR002048|Calcium-binding
EF-hand
         (588 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.              23   5.3  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   7.0  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            23   7.0  

>DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.
          Length = 135

 Score = 23.4 bits (48), Expect = 5.3
 Identities = 11/36 (30%), Positives = 18/36 (50%)

Query: 80  LVQDVVDTHPGLSFLKEATEFHSRYVHTVIARIFYC 115
           +VQ V+D +     + E +      VH  I++IF C
Sbjct: 87  IVQAVLDDNETDQLIVECSPISDANVHIKISKIFQC 122


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.0 bits (47), Expect = 7.0
 Identities = 9/17 (52%), Positives = 10/17 (58%)

Query: 571 RRDEEDGDYARDSDECS 587
           RRD +DG    D DE S
Sbjct: 193 RRDSDDGSDGNDGDESS 209


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 23.0 bits (47), Expect = 7.0
 Identities = 9/27 (33%), Positives = 15/27 (55%)

Query: 171 RDHDLFIDRHDLARHNDHALSSRMIER 197
           +D  +F+D HD  R N   L+ +  +R
Sbjct: 299 KDSLVFVDNHDTQRDNPQILTYKYSKR 325


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.136    0.419 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,912
Number of Sequences: 429
Number of extensions: 6818
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 3
length of query: 588
length of database: 140,377
effective HSP length: 61
effective length of query: 527
effective length of database: 114,208
effective search space: 60187616
effective search space used: 60187616
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 46 (22.6 bits)